Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1270 and Dsui_1271 are separated by 10 nucleotides Dsui_1271 and Dsui_1272 are separated by 357 nucleotides Dsui_1272 and Dsui_1273 are separated by 75 nucleotides
Dsui_1270: Dsui_1270 - C-terminal processing peptidase, at 1,332,951 to 1,334,354
_1270
Dsui_1271: Dsui_1271 - membrane-bound metallopeptidase, at 1,334,365 to 1,335,825
_1271
Dsui_1272: Dsui_1272 - putative transcriptional regulator, at 1,336,183 to 1,336,509
_1272
Dsui_1273: Dsui_1273 - Rhodanese-related sulfurtransferase, at 1,336,585 to 1,336,998
_1273
Position (kb)
1334
1335
1336 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1334.319 kb on - strand at 1334.389 kb on - strand at 1334.450 kb on + strand at 1334.492 kb on - strand at 1334.605 kb on + strand, within Dsui_1271 at 1334.612 kb on - strand, within Dsui_1271 at 1334.716 kb on + strand, within Dsui_1271 at 1334.784 kb on + strand, within Dsui_1271 at 1334.909 kb on - strand, within Dsui_1271 at 1334.994 kb on - strand, within Dsui_1271 at 1335.014 kb on - strand, within Dsui_1271 at 1335.126 kb on + strand, within Dsui_1271 at 1335.223 kb on - strand, within Dsui_1271 at 1335.263 kb on + strand, within Dsui_1271 at 1335.322 kb on + strand at 1335.362 kb on + strand at 1335.362 kb on + strand, within Dsui_1271 at 1335.362 kb on - strand, within Dsui_1271 at 1335.414 kb on + strand, within Dsui_1271 at 1335.419 kb on + strand, within Dsui_1271 at 1335.422 kb on - strand, within Dsui_1271 at 1335.422 kb on - strand, within Dsui_1271 at 1335.445 kb on - strand, within Dsui_1271 at 1335.530 kb on - strand, within Dsui_1271 at 1335.638 kb on + strand, within Dsui_1271 at 1335.808 kb on - strand at 1335.809 kb on - strand at 1335.834 kb on + strand at 1335.840 kb on + strand at 1335.896 kb on - strand at 1335.896 kb on - strand at 1335.942 kb on - strand at 1335.948 kb on - strand at 1335.948 kb on - strand at 1335.980 kb on - strand at 1335.986 kb on - strand at 1335.988 kb on + strand at 1335.988 kb on + strand at 1335.988 kb on + strand at 1335.988 kb on + strand at 1335.988 kb on + strand at 1335.988 kb on + strand at 1335.995 kb on + strand at 1335.996 kb on - strand at 1335.996 kb on - strand at 1335.996 kb on - strand at 1335.996 kb on - strand at 1335.996 kb on - strand at 1336.006 kb on - strand at 1336.059 kb on + strand at 1336.059 kb on + strand at 1336.062 kb on + strand at 1336.064 kb on + strand at 1336.067 kb on - strand at 1336.069 kb on + strand at 1336.072 kb on - strand at 1336.072 kb on - strand at 1336.109 kb on + strand at 1336.117 kb on - strand at 1336.119 kb on + strand at 1336.152 kb on - strand at 1336.180 kb on - strand at 1336.183 kb on + strand at 1336.337 kb on - strand at 1336.367 kb on - strand at 1336.377 kb on + strand, within Dsui_1272 at 1336.429 kb on - strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.476 kb on + strand, within Dsui_1272 at 1336.484 kb on - strand at 1336.497 kb on - strand at 1336.497 kb on - strand at 1336.515 kb on + strand at 1336.523 kb on - strand at 1336.523 kb on - strand at 1336.523 kb on - strand at 1336.642 kb on + strand, within Dsui_1273 at 1336.697 kb on + strand, within Dsui_1273 at 1336.700 kb on + strand, within Dsui_1273
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,334,319 - -1.3 1,334,389 - -0.4 1,334,450 + -2.1 1,334,492 - +0.8 1,334,605 + Dsui_1271 0.16 -1.7 1,334,612 - Dsui_1271 0.17 +0.2 1,334,716 + Dsui_1271 0.24 -2.4 1,334,784 + Dsui_1271 0.29 -2.3 1,334,909 - Dsui_1271 0.37 -1.5 1,334,994 - Dsui_1271 0.43 -2.1 1,335,014 - Dsui_1271 0.44 -1.5 1,335,126 + Dsui_1271 0.52 +0.2 1,335,223 - Dsui_1271 0.59 +0.1 1,335,263 + Dsui_1271 0.61 -2.9 1,335,322 + +0.2 1,335,362 + -0.6 1,335,362 + Dsui_1271 0.68 -2.1 1,335,362 - Dsui_1271 0.68 -2.8 1,335,414 + Dsui_1271 0.72 -0.1 1,335,419 + Dsui_1271 0.72 -2.3 1,335,422 - Dsui_1271 0.72 -2.7 1,335,422 - Dsui_1271 0.72 -1.8 1,335,445 - Dsui_1271 0.74 -2.3 1,335,530 - Dsui_1271 0.80 -1.1 1,335,638 + Dsui_1271 0.87 -1.0 1,335,808 - -1.3 1,335,809 - +0.2 1,335,834 + +0.3 1,335,840 + +0.4 1,335,896 - -1.9 1,335,896 - -0.7 1,335,942 - -0.2 1,335,948 - +0.9 1,335,948 - -0.7 1,335,980 - -0.5 1,335,986 - -1.7 1,335,988 + -2.8 1,335,988 + -1.2 1,335,988 + -0.5 1,335,988 + -0.7 1,335,988 + -0.4 1,335,988 + -2.1 1,335,995 + -0.6 1,335,996 - -1.4 1,335,996 - -1.6 1,335,996 - -0.2 1,335,996 - -0.7 1,335,996 - +0.1 1,336,006 - +0.3 1,336,059 + +0.5 1,336,059 + -0.1 1,336,062 + -1.4 1,336,064 + -1.4 1,336,067 - -0.1 1,336,069 + -1.5 1,336,072 - +0.6 1,336,072 - -1.1 1,336,109 + +1.1 1,336,117 - +2.8 1,336,119 + +0.4 1,336,152 - +2.8 1,336,180 - +0.8 1,336,183 + +2.2 1,336,337 - +0.4 1,336,367 - +0.2 1,336,377 + Dsui_1272 0.59 +0.7 1,336,429 - Dsui_1272 0.75 -1.4 1,336,445 + Dsui_1272 0.80 +1.5 1,336,445 + Dsui_1272 0.80 -0.2 1,336,445 + Dsui_1272 0.80 +0.9 1,336,476 + Dsui_1272 0.90 +0.1 1,336,484 - +1.3 1,336,497 - +0.3 1,336,497 - -2.4 1,336,515 + -0.1 1,336,523 - +0.4 1,336,523 - -0.7 1,336,523 - +0.6 1,336,642 + Dsui_1273 0.14 +0.6 1,336,697 + Dsui_1273 0.27 +0.5 1,336,700 + Dsui_1273 0.28 -1.9
Or see this region's nucleotide sequence