Strain Fitness in Dechlorosoma suillum PS around Dsui_1114

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1113 and Dsui_1114 are separated by 162 nucleotidesDsui_1114 and Dsui_1115 are separated by 92 nucleotides Dsui_1113: Dsui_1113 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,160,202 to 1,161,038 _1113 Dsui_1114: Dsui_1114 - coenzyme F390 synthetase, at 1,161,201 to 1,162,433 _1114 Dsui_1115: Dsui_1115 - putative acyl-CoA transferase/carnitine dehydratase, at 1,162,526 to 1,163,692 _1115 Position (kb) 1161 1162 1163Strain fitness (log2 ratio) -1 0 1at 1160.330 kb on + strand, within Dsui_1113at 1160.511 kb on + strand, within Dsui_1113at 1160.516 kb on + strand, within Dsui_1113at 1160.534 kb on - strand, within Dsui_1113at 1160.650 kb on + strand, within Dsui_1113at 1160.709 kb on + strand, within Dsui_1113at 1160.843 kb on + strand, within Dsui_1113at 1160.920 kb on + strand, within Dsui_1113at 1160.926 kb on - strand, within Dsui_1113at 1160.962 kb on - strandat 1161.007 kb on - strandat 1161.044 kb on - strandat 1161.145 kb on - strandat 1161.146 kb on - strandat 1161.327 kb on - strand, within Dsui_1114at 1161.461 kb on + strand, within Dsui_1114at 1161.468 kb on + strand, within Dsui_1114at 1161.488 kb on + strand, within Dsui_1114at 1161.517 kb on + strand, within Dsui_1114at 1161.617 kb on - strand, within Dsui_1114at 1161.687 kb on - strand, within Dsui_1114at 1161.732 kb on + strand, within Dsui_1114at 1161.802 kb on - strand, within Dsui_1114at 1161.809 kb on - strand, within Dsui_1114at 1161.809 kb on - strand, within Dsui_1114at 1161.867 kb on - strand, within Dsui_1114at 1161.886 kb on + strand, within Dsui_1114at 1161.931 kb on + strand, within Dsui_1114at 1161.938 kb on - strand, within Dsui_1114at 1162.024 kb on - strand, within Dsui_1114at 1162.129 kb on - strand, within Dsui_1114at 1162.133 kb on + strand, within Dsui_1114at 1162.247 kb on - strand, within Dsui_1114at 1162.280 kb on - strand, within Dsui_1114at 1162.280 kb on - strand, within Dsui_1114at 1162.288 kb on - strand, within Dsui_1114at 1162.352 kb on - strandat 1162.415 kb on + strandat 1162.482 kb on - strandat 1162.540 kb on + strandat 1162.565 kb on - strandat 1162.565 kb on - strandat 1162.596 kb on + strandat 1162.680 kb on + strand, within Dsui_1115at 1162.690 kb on + strand, within Dsui_1115at 1163.152 kb on - strand, within Dsui_1115at 1163.365 kb on + strand, within Dsui_1115at 1163.365 kb on + strand, within Dsui_1115at 1163.392 kb on + strand, within Dsui_1115at 1163.424 kb on - strand, within Dsui_1115at 1163.427 kb on - strand, within Dsui_1115

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,160,330 + Dsui_1113 0.15 +0.1
1,160,511 + Dsui_1113 0.37 +1.0
1,160,516 + Dsui_1113 0.38 -0.2
1,160,534 - Dsui_1113 0.40 -0.6
1,160,650 + Dsui_1113 0.54 +0.4
1,160,709 + Dsui_1113 0.61 -0.1
1,160,843 + Dsui_1113 0.77 -1.0
1,160,920 + Dsui_1113 0.86 +1.4
1,160,926 - Dsui_1113 0.86 -0.4
1,160,962 - +1.4
1,161,007 - -0.2
1,161,044 - -0.4
1,161,145 - +0.0
1,161,146 - -0.5
1,161,327 - Dsui_1114 0.10 +1.4
1,161,461 + Dsui_1114 0.21 +0.6
1,161,468 + Dsui_1114 0.22 -0.2
1,161,488 + Dsui_1114 0.23 +0.5
1,161,517 + Dsui_1114 0.26 +0.0
1,161,617 - Dsui_1114 0.34 +0.1
1,161,687 - Dsui_1114 0.39 +1.0
1,161,732 + Dsui_1114 0.43 -0.5
1,161,802 - Dsui_1114 0.49 +0.0
1,161,809 - Dsui_1114 0.49 -0.0
1,161,809 - Dsui_1114 0.49 -0.4
1,161,867 - Dsui_1114 0.54 -0.4
1,161,886 + Dsui_1114 0.56 -0.1
1,161,931 + Dsui_1114 0.59 -0.5
1,161,938 - Dsui_1114 0.60 +0.2
1,162,024 - Dsui_1114 0.67 -0.0
1,162,129 - Dsui_1114 0.75 -0.2
1,162,133 + Dsui_1114 0.76 +0.1
1,162,247 - Dsui_1114 0.85 +0.3
1,162,280 - Dsui_1114 0.88 +0.2
1,162,280 - Dsui_1114 0.88 -0.0
1,162,288 - Dsui_1114 0.88 +0.3
1,162,352 - -0.6
1,162,415 + -0.3
1,162,482 - -1.1
1,162,540 + -1.2
1,162,565 - -1.5
1,162,565 - +0.0
1,162,596 + +0.3
1,162,680 + Dsui_1115 0.13 -1.4
1,162,690 + Dsui_1115 0.14 -0.7
1,163,152 - Dsui_1115 0.54 -0.2
1,163,365 + Dsui_1115 0.72 -0.8
1,163,365 + Dsui_1115 0.72 +0.2
1,163,392 + Dsui_1115 0.74 -0.4
1,163,424 - Dsui_1115 0.77 -0.2
1,163,427 - Dsui_1115 0.77 -0.0

Or see this region's nucleotide sequence