Strain Fitness in Dechlorosoma suillum PS around Dsui_1056

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1054 and Dsui_1055 are separated by 31 nucleotidesDsui_1055 and Dsui_1056 are separated by 1 nucleotidesDsui_1056 and Dsui_1057 are separated by 146 nucleotides Dsui_1054: Dsui_1054 - pyridoxal-phosphate dependent TrpB-like enzyme, at 1,087,419 to 1,088,783 _1054 Dsui_1055: Dsui_1055 - sporulation related protein, at 1,088,815 to 1,089,660 _1055 Dsui_1056: Dsui_1056 - dephospho-CoA kinase, at 1,089,662 to 1,090,279 _1056 Dsui_1057: Dsui_1057 - hypothetical protein, at 1,090,426 to 1,091,178 _1057 Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -2 -1 0 1at 1088.713 kb on + strandat 1088.755 kb on + strandat 1088.755 kb on + strandat 1089.162 kb on + strand, within Dsui_1055at 1089.255 kb on + strand, within Dsui_1055at 1089.383 kb on + strand, within Dsui_1055at 1089.472 kb on - strand, within Dsui_1055at 1089.492 kb on + strand, within Dsui_1055at 1089.492 kb on + strand, within Dsui_1055at 1089.500 kb on - strand, within Dsui_1055at 1089.630 kb on - strandat 1089.649 kb on + strandat 1089.654 kb on + strandat 1090.308 kb on + strandat 1090.309 kb on - strandat 1090.316 kb on - strandat 1090.324 kb on - strandat 1090.339 kb on + strandat 1090.403 kb on + strandat 1091.279 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,088,713 + -0.3
1,088,755 + +0.3
1,088,755 + -0.1
1,089,162 + Dsui_1055 0.41 +0.5
1,089,255 + Dsui_1055 0.52 -0.7
1,089,383 + Dsui_1055 0.67 -0.0
1,089,472 - Dsui_1055 0.78 +0.3
1,089,492 + Dsui_1055 0.80 -1.9
1,089,492 + Dsui_1055 0.80 -1.2
1,089,500 - Dsui_1055 0.81 -1.2
1,089,630 - +0.8
1,089,649 + +0.0
1,089,654 + -0.9
1,090,308 + +0.1
1,090,309 - +0.3
1,090,316 - +0.2
1,090,324 - +0.8
1,090,339 + +1.0
1,090,403 + +0.3
1,091,279 + +0.2

Or see this region's nucleotide sequence