Strain Fitness in Dechlorosoma suillum PS around Dsui_1050

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1048 and Dsui_1049 are separated by 170 nucleotidesDsui_1049 and Dsui_1050 are separated by 38 nucleotidesDsui_1050 and Dsui_1051 are separated by 79 nucleotides Dsui_1048: Dsui_1048 - glutamine synthetase, type I, at 1,080,926 to 1,082,338 _1048 Dsui_1049: Dsui_1049 - hypothetical protein, at 1,082,509 to 1,083,009 _1049 Dsui_1050: Dsui_1050 - signal transduction histidine kinase, nitrogen specific, at 1,083,048 to 1,084,103 _1050 Dsui_1051: Dsui_1051 - nitrogen regulation protein NR(I), at 1,084,183 to 1,085,619 _1051 Position (kb) 1083 1084 1085Strain fitness (log2 ratio) -2 -1 0 1at 1082.331 kb on + strandat 1082.331 kb on + strandat 1082.432 kb on - strandat 1082.531 kb on + strandat 1082.562 kb on - strand, within Dsui_1049at 1082.616 kb on + strand, within Dsui_1049at 1082.621 kb on + strand, within Dsui_1049at 1082.761 kb on - strand, within Dsui_1049at 1082.823 kb on - strand, within Dsui_1049at 1082.853 kb on - strand, within Dsui_1049at 1082.928 kb on + strand, within Dsui_1049at 1082.970 kb on + strandat 1082.978 kb on - strandat 1082.978 kb on - strandat 1083.039 kb on - strandat 1083.193 kb on + strand, within Dsui_1050at 1083.234 kb on - strand, within Dsui_1050at 1083.245 kb on - strand, within Dsui_1050at 1083.249 kb on + strand, within Dsui_1050at 1083.249 kb on + strandat 1083.249 kb on + strand, within Dsui_1050at 1083.257 kb on - strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.274 kb on - strand, within Dsui_1050at 1083.395 kb on - strand, within Dsui_1050at 1083.406 kb on + strandat 1083.406 kb on + strand, within Dsui_1050at 1083.442 kb on + strand, within Dsui_1050at 1083.450 kb on - strand, within Dsui_1050at 1083.535 kb on + strand, within Dsui_1050at 1083.535 kb on + strand, within Dsui_1050at 1083.538 kb on - strand, within Dsui_1050at 1083.539 kb on - strand, within Dsui_1050at 1083.541 kb on + strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.555 kb on + strand, within Dsui_1050at 1083.579 kb on - strand, within Dsui_1050at 1083.657 kb on + strand, within Dsui_1050at 1083.666 kb on + strand, within Dsui_1050at 1083.723 kb on + strand, within Dsui_1050at 1083.775 kb on - strand, within Dsui_1050at 1083.775 kb on - strand, within Dsui_1050at 1083.787 kb on - strand, within Dsui_1050at 1083.806 kb on + strand, within Dsui_1050at 1083.822 kb on + strand, within Dsui_1050at 1083.927 kb on + strand, within Dsui_1050at 1084.012 kb on - strandat 1084.136 kb on + strandat 1084.138 kb on + strandat 1084.151 kb on - strandat 1084.183 kb on + strandat 1084.270 kb on + strandat 1084.363 kb on + strand, within Dsui_1051at 1084.371 kb on - strand, within Dsui_1051at 1084.371 kb on - strand, within Dsui_1051at 1084.372 kb on - strand, within Dsui_1051at 1084.397 kb on + strand, within Dsui_1051at 1084.411 kb on - strand, within Dsui_1051at 1084.443 kb on - strandat 1084.511 kb on + strand, within Dsui_1051at 1084.516 kb on + strand, within Dsui_1051at 1084.521 kb on + strand, within Dsui_1051at 1084.602 kb on + strand, within Dsui_1051at 1084.610 kb on - strandat 1084.727 kb on + strand, within Dsui_1051at 1084.735 kb on - strand, within Dsui_1051at 1084.738 kb on + strand, within Dsui_1051at 1084.853 kb on + strand, within Dsui_1051at 1084.863 kb on + strand, within Dsui_1051at 1084.871 kb on - strand, within Dsui_1051at 1085.073 kb on + strand, within Dsui_1051

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
1,082,331 + +0.0
1,082,331 + +0.1
1,082,432 - +0.9
1,082,531 + -0.2
1,082,562 - Dsui_1049 0.11 -1.2
1,082,616 + Dsui_1049 0.21 -0.6
1,082,621 + Dsui_1049 0.22 -2.1
1,082,761 - Dsui_1049 0.50 -1.0
1,082,823 - Dsui_1049 0.63 -0.5
1,082,853 - Dsui_1049 0.69 +0.7
1,082,928 + Dsui_1049 0.84 -1.3
1,082,970 + -0.9
1,082,978 - +1.1
1,082,978 - -2.2
1,083,039 - +0.9
1,083,193 + Dsui_1050 0.14 +0.0
1,083,234 - Dsui_1050 0.18 +0.0
1,083,245 - Dsui_1050 0.19 +0.7
1,083,249 + Dsui_1050 0.19 +0.1
1,083,249 + +0.5
1,083,249 + Dsui_1050 0.19 -0.3
1,083,257 - Dsui_1050 0.20 +0.2
1,083,266 + Dsui_1050 0.21 +0.9
1,083,266 + Dsui_1050 0.21 +1.1
1,083,274 - Dsui_1050 0.21 -1.1
1,083,395 - Dsui_1050 0.33 +1.0
1,083,406 + +0.2
1,083,406 + Dsui_1050 0.34 -0.2
1,083,442 + Dsui_1050 0.37 -0.0
1,083,450 - Dsui_1050 0.38 -0.1
1,083,535 + Dsui_1050 0.46 -0.1
1,083,535 + Dsui_1050 0.46 +0.6
1,083,538 - Dsui_1050 0.46 +0.7
1,083,539 - Dsui_1050 0.46 +1.0
1,083,541 + Dsui_1050 0.47 -0.0
1,083,543 - Dsui_1050 0.47 +0.7
1,083,543 - Dsui_1050 0.47 -0.9
1,083,543 - Dsui_1050 0.47 +0.5
1,083,555 + Dsui_1050 0.48 -0.1
1,083,579 - Dsui_1050 0.50 -0.2
1,083,657 + Dsui_1050 0.58 -0.2
1,083,666 + Dsui_1050 0.59 +1.0
1,083,723 + Dsui_1050 0.64 +0.4
1,083,775 - Dsui_1050 0.69 +0.8
1,083,775 - Dsui_1050 0.69 +0.8
1,083,787 - Dsui_1050 0.70 +0.3
1,083,806 + Dsui_1050 0.72 +0.0
1,083,822 + Dsui_1050 0.73 -0.0
1,083,927 + Dsui_1050 0.83 +1.4
1,084,012 - +0.2
1,084,136 + -0.3
1,084,138 + -0.9
1,084,151 - -0.6
1,084,183 + -0.3
1,084,270 + +0.1
1,084,363 + Dsui_1051 0.13 -0.8
1,084,371 - Dsui_1051 0.13 +0.4
1,084,371 - Dsui_1051 0.13 +0.1
1,084,372 - Dsui_1051 0.13 +0.6
1,084,397 + Dsui_1051 0.15 +0.5
1,084,411 - Dsui_1051 0.16 +1.1
1,084,443 - -1.2
1,084,511 + Dsui_1051 0.23 +0.8
1,084,516 + Dsui_1051 0.23 -0.0
1,084,521 + Dsui_1051 0.24 +0.1
1,084,602 + Dsui_1051 0.29 -0.5
1,084,610 - -0.2
1,084,727 + Dsui_1051 0.38 -0.1
1,084,735 - Dsui_1051 0.38 -0.5
1,084,738 + Dsui_1051 0.39 -0.5
1,084,853 + Dsui_1051 0.47 +1.3
1,084,863 + Dsui_1051 0.47 -0.2
1,084,871 - Dsui_1051 0.48 -0.3
1,085,073 + Dsui_1051 0.62 +1.1

Or see this region's nucleotide sequence