Strain Fitness in Dechlorosoma suillum PS around Dsui_0751

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0749 and Dsui_0750 are separated by 23 nucleotidesDsui_0750 and Dsui_0751 are separated by 1 nucleotidesDsui_0751 and Dsui_0752 are separated by 212 nucleotidesDsui_0752 and Dsui_0753 are separated by 130 nucleotides Dsui_0749: Dsui_0749 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 747,299 to 750,160 _0749 Dsui_0750: Dsui_0750 - hypothetical protein, at 750,184 to 750,516 _0750 Dsui_0751: Dsui_0751 - Eco57I restriction endonuclease, at 750,518 to 751,729 _0751 Dsui_0752: Dsui_0752 - hypothetical protein, at 751,942 to 752,103 _0752 Dsui_0753: Dsui_0753 - ATPase component of ABC transporters with duplicated ATPase domain, at 752,234 to 753,850 _0753 Position (kb) 750 751 752Strain fitness (log2 ratio) -1 0 1 2at 749.576 kb on + strand, within Dsui_0749at 749.623 kb on - strand, within Dsui_0749at 749.635 kb on - strand, within Dsui_0749at 749.640 kb on - strandat 749.670 kb on + strand, within Dsui_0749at 749.677 kb on + strand, within Dsui_0749at 749.685 kb on - strand, within Dsui_0749at 749.885 kb on + strandat 749.909 kb on + strandat 749.922 kb on - strandat 749.998 kb on - strandat 750.102 kb on - strandat 750.143 kb on - strandat 750.203 kb on + strandat 750.290 kb on - strand, within Dsui_0750at 750.373 kb on + strand, within Dsui_0750at 750.387 kb on + strandat 750.399 kb on + strand, within Dsui_0750at 750.399 kb on + strand, within Dsui_0750at 750.407 kb on - strand, within Dsui_0750at 750.419 kb on - strand, within Dsui_0750at 750.425 kb on - strand, within Dsui_0750at 750.560 kb on + strandat 750.577 kb on - strandat 750.620 kb on + strandat 750.706 kb on - strand, within Dsui_0751at 750.797 kb on - strand, within Dsui_0751at 750.840 kb on - strand, within Dsui_0751at 750.947 kb on + strandat 750.965 kb on + strand, within Dsui_0751at 750.980 kb on - strand, within Dsui_0751at 751.044 kb on + strand, within Dsui_0751at 751.051 kb on + strand, within Dsui_0751at 751.052 kb on - strand, within Dsui_0751at 751.059 kb on - strand, within Dsui_0751at 751.106 kb on - strand, within Dsui_0751at 751.170 kb on - strand, within Dsui_0751at 751.184 kb on - strand, within Dsui_0751at 751.188 kb on + strand, within Dsui_0751at 751.191 kb on - strand, within Dsui_0751at 751.193 kb on + strand, within Dsui_0751at 751.317 kb on - strand, within Dsui_0751at 751.398 kb on - strand, within Dsui_0751at 751.458 kb on + strand, within Dsui_0751at 751.458 kb on + strand, within Dsui_0751at 751.466 kb on - strand, within Dsui_0751at 751.466 kb on - strand, within Dsui_0751at 751.466 kb on - strand, within Dsui_0751at 751.509 kb on - strand, within Dsui_0751at 751.514 kb on - strand, within Dsui_0751at 751.624 kb on - strandat 751.666 kb on - strandat 751.717 kb on - strandat 751.743 kb on + strandat 751.745 kb on - strandat 751.745 kb on - strandat 751.745 kb on - strandat 751.778 kb on + strandat 751.778 kb on + strandat 751.783 kb on + strandat 751.785 kb on - strandat 751.821 kb on + strandat 751.821 kb on + strandat 751.829 kb on - strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.894 kb on - strandat 751.914 kb on + strandat 751.914 kb on + strandat 751.914 kb on + strandat 751.933 kb on + strandat 751.978 kb on + strand, within Dsui_0752at 752.028 kb on + strand, within Dsui_0752at 752.035 kb on + strand, within Dsui_0752at 752.036 kb on - strand, within Dsui_0752at 752.036 kb on - strandat 752.036 kb on - strand, within Dsui_0752at 752.040 kb on + strand, within Dsui_0752at 752.048 kb on - strand, within Dsui_0752at 752.059 kb on + strand, within Dsui_0752at 752.271 kb on - strandat 752.329 kb on + strandat 752.419 kb on + strand, within Dsui_0753at 752.438 kb on - strand, within Dsui_0753at 752.571 kb on + strand, within Dsui_0753at 752.680 kb on + strand, within Dsui_0753at 752.684 kb on + strand, within Dsui_0753

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
749,576 + Dsui_0749 0.80 -1.0
749,623 - Dsui_0749 0.81 +0.3
749,635 - Dsui_0749 0.82 +0.7
749,640 - +1.1
749,670 + Dsui_0749 0.83 +0.9
749,677 + Dsui_0749 0.83 -0.2
749,685 - Dsui_0749 0.83 +1.3
749,885 + +0.9
749,909 + +1.0
749,922 - +0.8
749,998 - +1.0
750,102 - +0.8
750,143 - -0.2
750,203 + +0.4
750,290 - Dsui_0750 0.32 +0.6
750,373 + Dsui_0750 0.57 +1.2
750,387 + +0.3
750,399 + Dsui_0750 0.65 +1.1
750,399 + Dsui_0750 0.65 +0.2
750,407 - Dsui_0750 0.67 -0.2
750,419 - Dsui_0750 0.71 -0.1
750,425 - Dsui_0750 0.72 +0.3
750,560 + -0.2
750,577 - +1.7
750,620 + +0.2
750,706 - Dsui_0751 0.16 +2.7
750,797 - Dsui_0751 0.23 +1.1
750,840 - Dsui_0751 0.27 +0.4
750,947 + +1.7
750,965 + Dsui_0751 0.37 +1.2
750,980 - Dsui_0751 0.38 +0.5
751,044 + Dsui_0751 0.43 +1.1
751,051 + Dsui_0751 0.44 +1.5
751,052 - Dsui_0751 0.44 -0.0
751,059 - Dsui_0751 0.45 +1.7
751,106 - Dsui_0751 0.49 +0.9
751,170 - Dsui_0751 0.54 +1.7
751,184 - Dsui_0751 0.55 +0.5
751,188 + Dsui_0751 0.55 +0.3
751,191 - Dsui_0751 0.56 +1.2
751,193 + Dsui_0751 0.56 +0.9
751,317 - Dsui_0751 0.66 +0.4
751,398 - Dsui_0751 0.73 +1.1
751,458 + Dsui_0751 0.78 +0.1
751,458 + Dsui_0751 0.78 +0.3
751,466 - Dsui_0751 0.78 +1.0
751,466 - Dsui_0751 0.78 +0.6
751,466 - Dsui_0751 0.78 +0.7
751,509 - Dsui_0751 0.82 +0.7
751,514 - Dsui_0751 0.82 +0.9
751,624 - +1.2
751,666 - -0.5
751,717 - +2.0
751,743 + -0.0
751,745 - +0.2
751,745 - -0.1
751,745 - +0.4
751,778 + +1.3
751,778 + +0.3
751,783 + +0.3
751,785 - +0.7
751,821 + -0.6
751,821 + -0.3
751,829 - -0.2
751,876 + -0.4
751,876 + +0.2
751,876 + +0.1
751,876 + -0.2
751,876 + +0.1
751,876 + -0.3
751,876 + -0.1
751,876 + +0.1
751,884 - -0.5
751,884 - +1.7
751,884 - +1.1
751,884 - +0.3
751,884 - -0.8
751,884 - +1.3
751,894 - -0.7
751,914 + +0.5
751,914 + +0.1
751,914 + -0.0
751,933 + +0.4
751,978 + Dsui_0752 0.22 +0.7
752,028 + Dsui_0752 0.53 +0.0
752,035 + Dsui_0752 0.57 -0.4
752,036 - Dsui_0752 0.58 -0.1
752,036 - +0.7
752,036 - Dsui_0752 0.58 +2.2
752,040 + Dsui_0752 0.60 -1.2
752,048 - Dsui_0752 0.65 -0.7
752,059 + Dsui_0752 0.72 +0.1
752,271 - +0.4
752,329 + +0.9
752,419 + Dsui_0753 0.11 +0.1
752,438 - Dsui_0753 0.13 +1.1
752,571 + Dsui_0753 0.21 -0.5
752,680 + Dsui_0753 0.28 +0.4
752,684 + Dsui_0753 0.28 +0.8

Or see this region's nucleotide sequence