Strain Fitness in Dechlorosoma suillum PS around Dsui_0262

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0261 and Dsui_0262 are separated by 133 nucleotidesDsui_0262 and Dsui_0263 overlap by 4 nucleotides Dsui_0261: Dsui_0261 - sulfate/thiosulfate-binding protein, at 258,734 to 259,747 _0261 Dsui_0262: Dsui_0262 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 259,881 to 262,799 _0262 Dsui_0263: Dsui_0263 - cytochrome c peroxidase, at 262,796 to 263,830 _0263 Position (kb) 259 260 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2 3at 258.947 kb on + strand, within Dsui_0261at 258.948 kb on + strand, within Dsui_0261at 258.956 kb on - strand, within Dsui_0261at 258.956 kb on - strand, within Dsui_0261at 259.027 kb on + strand, within Dsui_0261at 259.035 kb on - strand, within Dsui_0261at 259.058 kb on + strand, within Dsui_0261at 259.239 kb on - strand, within Dsui_0261at 259.258 kb on + strand, within Dsui_0261at 259.266 kb on - strand, within Dsui_0261at 259.340 kb on - strand, within Dsui_0261at 259.347 kb on + strand, within Dsui_0261at 259.376 kb on + strand, within Dsui_0261at 259.422 kb on + strand, within Dsui_0261at 259.422 kb on + strand, within Dsui_0261at 259.435 kb on - strand, within Dsui_0261at 259.512 kb on + strandat 259.536 kb on - strand, within Dsui_0261at 259.575 kb on + strand, within Dsui_0261at 259.583 kb on - strand, within Dsui_0261at 259.655 kb on - strandat 259.665 kb on - strandat 259.685 kb on - strandat 259.725 kb on - strandat 259.742 kb on + strandat 259.795 kb on - strandat 259.918 kb on + strandat 259.926 kb on - strandat 259.926 kb on - strandat 259.976 kb on - strandat 260.003 kb on - strandat 260.048 kb on + strandat 260.084 kb on + strandat 260.137 kb on + strandat 260.244 kb on - strand, within Dsui_0262at 260.317 kb on + strand, within Dsui_0262at 260.423 kb on - strand, within Dsui_0262at 260.570 kb on - strand, within Dsui_0262at 260.672 kb on + strand, within Dsui_0262at 260.730 kb on + strand, within Dsui_0262at 260.783 kb on - strand, within Dsui_0262at 260.851 kb on - strand, within Dsui_0262at 260.904 kb on - strand, within Dsui_0262at 260.929 kb on + strand, within Dsui_0262at 260.965 kb on - strand, within Dsui_0262at 260.973 kb on - strand, within Dsui_0262at 261.007 kb on + strand, within Dsui_0262at 261.007 kb on + strand, within Dsui_0262at 261.066 kb on + strand, within Dsui_0262at 261.074 kb on - strand, within Dsui_0262at 261.193 kb on + strand, within Dsui_0262at 261.198 kb on + strandat 261.240 kb on - strand, within Dsui_0262at 261.262 kb on - strand, within Dsui_0262at 261.312 kb on - strandat 261.314 kb on + strand, within Dsui_0262at 261.402 kb on + strand, within Dsui_0262at 261.452 kb on + strand, within Dsui_0262at 261.478 kb on - strand, within Dsui_0262at 261.627 kb on - strand, within Dsui_0262at 261.885 kb on + strand, within Dsui_0262at 261.891 kb on + strand, within Dsui_0262at 261.919 kb on - strand, within Dsui_0262at 261.943 kb on - strand, within Dsui_0262at 261.945 kb on - strand, within Dsui_0262at 261.988 kb on - strand, within Dsui_0262at 262.105 kb on - strand, within Dsui_0262at 262.110 kb on + strand, within Dsui_0262at 262.142 kb on + strand, within Dsui_0262at 262.234 kb on + strand, within Dsui_0262at 262.242 kb on - strand, within Dsui_0262at 262.384 kb on + strand, within Dsui_0262at 262.438 kb on + strand, within Dsui_0262at 262.466 kb on - strand, within Dsui_0262at 262.501 kb on - strand, within Dsui_0262at 262.543 kb on + strandat 262.625 kb on + strandat 262.671 kb on + strandat 262.672 kb on + strandat 262.678 kb on + strandat 262.686 kb on - strandat 262.696 kb on - strandat 262.754 kb on - strandat 262.794 kb on + strandat 262.825 kb on + strandat 262.975 kb on - strand, within Dsui_0263at 262.975 kb on - strand, within Dsui_0263at 263.090 kb on - strand, within Dsui_0263at 263.250 kb on + strand, within Dsui_0263at 263.256 kb on + strandat 263.339 kb on - strand, within Dsui_0263at 263.388 kb on + strand, within Dsui_0263at 263.396 kb on - strand, within Dsui_0263at 263.451 kb on + strand, within Dsui_0263at 263.523 kb on + strandat 263.566 kb on - strand, within Dsui_0263at 263.665 kb on + strand, within Dsui_0263at 263.702 kb on + strandat 263.784 kb on - strandat 263.786 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
258,947 + Dsui_0261 0.21 +2.3
258,948 + Dsui_0261 0.21 +0.8
258,956 - Dsui_0261 0.22 +0.5
258,956 - Dsui_0261 0.22 +3.3
259,027 + Dsui_0261 0.29 +1.4
259,035 - Dsui_0261 0.30 +2.2
259,058 + Dsui_0261 0.32 +2.4
259,239 - Dsui_0261 0.50 +3.4
259,258 + Dsui_0261 0.52 +0.8
259,266 - Dsui_0261 0.52 +3.3
259,340 - Dsui_0261 0.60 +2.8
259,347 + Dsui_0261 0.60 -0.4
259,376 + Dsui_0261 0.63 +0.1
259,422 + Dsui_0261 0.68 -0.4
259,422 + Dsui_0261 0.68 -1.7
259,435 - Dsui_0261 0.69 -0.2
259,512 + -1.4
259,536 - Dsui_0261 0.79 +1.2
259,575 + Dsui_0261 0.83 -0.2
259,583 - Dsui_0261 0.84 +0.4
259,655 - +0.7
259,665 - -0.2
259,685 - -0.1
259,725 - -0.9
259,742 + +0.0
259,795 - +2.4
259,918 + +0.6
259,926 - +0.7
259,926 - -0.2
259,976 - +1.2
260,003 - +0.3
260,048 + +0.1
260,084 + -0.3
260,137 + -0.8
260,244 - Dsui_0262 0.12 +0.5
260,317 + Dsui_0262 0.15 +0.4
260,423 - Dsui_0262 0.19 +0.5
260,570 - Dsui_0262 0.24 -0.3
260,672 + Dsui_0262 0.27 +0.2
260,730 + Dsui_0262 0.29 -0.8
260,783 - Dsui_0262 0.31 -0.8
260,851 - Dsui_0262 0.33 -1.0
260,904 - Dsui_0262 0.35 +1.7
260,929 + Dsui_0262 0.36 -0.1
260,965 - Dsui_0262 0.37 +0.3
260,973 - Dsui_0262 0.37 +0.1
261,007 + Dsui_0262 0.39 +1.4
261,007 + Dsui_0262 0.39 +0.2
261,066 + Dsui_0262 0.41 +2.5
261,074 - Dsui_0262 0.41 -0.8
261,193 + Dsui_0262 0.45 +0.8
261,198 + -0.8
261,240 - Dsui_0262 0.47 +1.1
261,262 - Dsui_0262 0.47 +0.9
261,312 - +1.8
261,314 + Dsui_0262 0.49 -0.3
261,402 + Dsui_0262 0.52 -1.5
261,452 + Dsui_0262 0.54 +1.0
261,478 - Dsui_0262 0.55 +1.5
261,627 - Dsui_0262 0.60 +0.4
261,885 + Dsui_0262 0.69 -0.4
261,891 + Dsui_0262 0.69 -0.1
261,919 - Dsui_0262 0.70 -0.6
261,943 - Dsui_0262 0.71 +0.4
261,945 - Dsui_0262 0.71 +0.8
261,988 - Dsui_0262 0.72 -0.9
262,105 - Dsui_0262 0.76 +0.7
262,110 + Dsui_0262 0.76 -1.8
262,142 + Dsui_0262 0.77 -0.4
262,234 + Dsui_0262 0.81 -0.6
262,242 - Dsui_0262 0.81 +0.2
262,384 + Dsui_0262 0.86 +0.5
262,438 + Dsui_0262 0.88 +0.1
262,466 - Dsui_0262 0.89 +0.9
262,501 - Dsui_0262 0.90 +0.4
262,543 + -1.0
262,625 + -0.9
262,671 + -0.3
262,672 + +0.8
262,678 + -1.7
262,686 - +0.7
262,696 - -0.1
262,754 - +1.1
262,794 + -1.1
262,825 + +0.2
262,975 - Dsui_0263 0.17 +1.4
262,975 - Dsui_0263 0.17 +1.0
263,090 - Dsui_0263 0.28 +0.2
263,250 + Dsui_0263 0.44 -0.8
263,256 + +0.2
263,339 - Dsui_0263 0.52 +0.5
263,388 + Dsui_0263 0.57 +0.1
263,396 - Dsui_0263 0.58 +1.2
263,451 + Dsui_0263 0.63 -0.3
263,523 + +0.8
263,566 - Dsui_0263 0.74 +0.2
263,665 + Dsui_0263 0.84 +0.6
263,702 + +1.6
263,784 - -0.5
263,786 - -0.1

Or see this region's nucleotide sequence