Strain Fitness in Dechlorosoma suillum PS around Dsui_0089

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0087 and Dsui_0088 are separated by 178 nucleotidesDsui_0088 and Dsui_0089 are separated by 55 nucleotidesDsui_0089 and Dsui_0090 are separated by 132 nucleotides Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854 _0087 Dsui_0088: Dsui_0088 - tRNA-Ala, at 87,033 to 87,108 _0088 Dsui_0089: Dsui_0089 - methyl-accepting chemotaxis protein, at 87,164 to 88,798 _0089 Dsui_0090: Dsui_0090 - Sua5/YciO/YrdC/YwlC family protein, at 88,931 to 89,941 _0090 Position (kb) 87 88 89Strain fitness (log2 ratio) -3 -2 -1 0 1at 86.184 kb on + strand, within Dsui_0087at 86.218 kb on + strand, within Dsui_0087at 86.284 kb on + strand, within Dsui_0087at 86.292 kb on - strand, within Dsui_0087at 86.394 kb on - strand, within Dsui_0087at 86.433 kb on - strand, within Dsui_0087at 86.455 kb on - strand, within Dsui_0087at 86.544 kb on - strand, within Dsui_0087at 86.554 kb on - strand, within Dsui_0087at 86.564 kb on - strand, within Dsui_0087at 86.584 kb on + strand, within Dsui_0087at 86.698 kb on + strandat 86.698 kb on + strand, within Dsui_0087at 86.801 kb on - strandat 86.825 kb on - strandat 86.833 kb on + strandat 86.879 kb on + strandat 86.919 kb on + strandat 86.929 kb on + strandat 86.929 kb on + strandat 86.937 kb on - strandat 86.973 kb on + strandat 87.016 kb on + strandat 87.017 kb on - strandat 87.021 kb on + strandat 87.040 kb on - strandat 87.040 kb on - strandat 87.056 kb on + strand, within Dsui_0088at 87.064 kb on - strand, within Dsui_0088at 87.087 kb on + strand, within Dsui_0088at 87.094 kb on - strand, within Dsui_0088at 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.144 kb on - strandat 87.144 kb on - strandat 87.180 kb on - strandat 87.237 kb on + strandat 87.250 kb on - strandat 87.278 kb on - strandat 87.284 kb on - strandat 87.323 kb on - strandat 87.330 kb on + strand, within Dsui_0089at 87.340 kb on + strand, within Dsui_0089at 87.343 kb on - strand, within Dsui_0089at 87.402 kb on + strand, within Dsui_0089at 87.490 kb on + strand, within Dsui_0089at 87.549 kb on - strand, within Dsui_0089at 87.564 kb on - strand, within Dsui_0089at 87.587 kb on - strand, within Dsui_0089at 87.768 kb on + strand, within Dsui_0089at 87.783 kb on + strand, within Dsui_0089at 87.818 kb on + strand, within Dsui_0089at 87.882 kb on - strand, within Dsui_0089at 87.882 kb on - strand, within Dsui_0089at 87.910 kb on - strand, within Dsui_0089at 87.910 kb on - strand, within Dsui_0089at 87.976 kb on + strand, within Dsui_0089at 87.990 kb on + strand, within Dsui_0089at 88.064 kb on + strand, within Dsui_0089at 88.067 kb on + strandat 88.122 kb on - strand, within Dsui_0089at 88.145 kb on - strand, within Dsui_0089at 88.145 kb on - strand, within Dsui_0089at 88.145 kb on - strand, within Dsui_0089at 88.198 kb on + strand, within Dsui_0089at 88.218 kb on - strand, within Dsui_0089at 88.228 kb on - strand, within Dsui_0089at 88.284 kb on + strand, within Dsui_0089at 88.292 kb on - strand, within Dsui_0089at 88.297 kb on - strand, within Dsui_0089at 88.297 kb on - strand, within Dsui_0089at 88.354 kb on + strand, within Dsui_0089at 88.425 kb on + strand, within Dsui_0089at 88.433 kb on - strand, within Dsui_0089at 88.433 kb on - strand, within Dsui_0089at 88.454 kb on - strand, within Dsui_0089at 88.545 kb on + strand, within Dsui_0089at 88.557 kb on + strandat 88.631 kb on + strand, within Dsui_0089at 88.719 kb on + strandat 88.729 kb on + strandat 88.738 kb on - strandat 88.743 kb on - strandat 88.781 kb on - strandat 88.781 kb on - strandat 88.781 kb on - strandat 88.782 kb on - strandat 88.782 kb on - strandat 88.782 kb on - strandat 88.812 kb on - strandat 88.820 kb on + strandat 88.844 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
86,184 + Dsui_0087 0.53 -1.6
86,218 + Dsui_0087 0.56 -2.0
86,284 + Dsui_0087 0.60 -1.3
86,292 - Dsui_0087 0.61 -3.3
86,394 - Dsui_0087 0.68 -2.1
86,433 - Dsui_0087 0.71 -2.7
86,455 - Dsui_0087 0.72 -2.8
86,544 - Dsui_0087 0.78 -2.7
86,554 - Dsui_0087 0.79 -2.1
86,564 - Dsui_0087 0.80 -1.0
86,584 + Dsui_0087 0.81 -2.4
86,698 + +0.7
86,698 + Dsui_0087 0.89 +0.0
86,801 - -2.1
86,825 - -2.5
86,833 + -2.6
86,879 + +0.0
86,919 + +0.6
86,929 + -0.2
86,929 + -0.6
86,937 - +0.1
86,973 + +0.1
87,016 + -0.7
87,017 - -0.3
87,021 + -0.1
87,040 - +0.4
87,040 - +0.1
87,056 + Dsui_0088 0.30 +0.9
87,064 - Dsui_0088 0.41 +0.2
87,087 + Dsui_0088 0.71 -0.3
87,094 - Dsui_0088 0.80 +0.2
87,136 + -1.9
87,136 + +0.1
87,136 + -1.0
87,136 + -0.8
87,136 + -0.3
87,136 + -0.9
87,144 - -1.5
87,144 - -0.2
87,180 - -0.0
87,237 + -0.5
87,250 - -0.7
87,278 - -0.2
87,284 - -0.0
87,323 - +0.6
87,330 + Dsui_0089 0.10 -1.3
87,340 + Dsui_0089 0.11 -0.5
87,343 - Dsui_0089 0.11 +0.6
87,402 + Dsui_0089 0.15 -1.3
87,490 + Dsui_0089 0.20 +0.0
87,549 - Dsui_0089 0.24 +0.2
87,564 - Dsui_0089 0.24 -0.0
87,587 - Dsui_0089 0.26 -0.3
87,768 + Dsui_0089 0.37 -0.1
87,783 + Dsui_0089 0.38 +0.5
87,818 + Dsui_0089 0.40 -0.9
87,882 - Dsui_0089 0.44 +0.1
87,882 - Dsui_0089 0.44 -0.2
87,910 - Dsui_0089 0.46 +1.4
87,910 - Dsui_0089 0.46 +0.1
87,976 + Dsui_0089 0.50 -1.7
87,990 + Dsui_0089 0.51 +0.0
88,064 + Dsui_0089 0.55 -1.9
88,067 + +0.5
88,122 - Dsui_0089 0.59 -0.9
88,145 - Dsui_0089 0.60 -0.1
88,145 - Dsui_0089 0.60 +0.3
88,145 - Dsui_0089 0.60 -0.0
88,198 + Dsui_0089 0.63 -1.1
88,218 - Dsui_0089 0.64 -0.2
88,228 - Dsui_0089 0.65 -0.7
88,284 + Dsui_0089 0.69 +0.1
88,292 - Dsui_0089 0.69 +0.1
88,297 - Dsui_0089 0.69 +0.0
88,297 - Dsui_0089 0.69 +0.2
88,354 + Dsui_0089 0.73 -0.5
88,425 + Dsui_0089 0.77 +0.1
88,433 - Dsui_0089 0.78 +0.0
88,433 - Dsui_0089 0.78 -0.1
88,454 - Dsui_0089 0.79 +0.2
88,545 + Dsui_0089 0.84 -1.0
88,557 + +0.5
88,631 + Dsui_0089 0.90 -1.6
88,719 + +0.5
88,729 + -0.3
88,738 - -0.2
88,743 - -0.2
88,781 - +0.2
88,781 - +0.2
88,781 - -0.9
88,782 - -0.1
88,782 - -0.3
88,782 - +0.0
88,812 - +0.2
88,820 + -1.1
88,844 + +0.7

Or see this region's nucleotide sequence