Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0087 and Dsui_0088 are separated by 178 nucleotides Dsui_0088 and Dsui_0089 are separated by 55 nucleotides Dsui_0089 and Dsui_0090 are separated by 132 nucleotides
Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854
_0087
Dsui_0088: Dsui_0088 - tRNA-Ala, at 87,033 to 87,108
_0088
Dsui_0089: Dsui_0089 - methyl-accepting chemotaxis protein, at 87,164 to 88,798
_0089
Dsui_0090: Dsui_0090 - Sua5/YciO/YrdC/YwlC family protein, at 88,931 to 89,941
_0090
Position (kb)
87
88
89 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 86.184 kb on + strand, within Dsui_0087 at 86.218 kb on + strand, within Dsui_0087 at 86.284 kb on + strand, within Dsui_0087 at 86.292 kb on - strand, within Dsui_0087 at 86.394 kb on - strand, within Dsui_0087 at 86.433 kb on - strand, within Dsui_0087 at 86.455 kb on - strand, within Dsui_0087 at 86.544 kb on - strand, within Dsui_0087 at 86.554 kb on - strand, within Dsui_0087 at 86.564 kb on - strand, within Dsui_0087 at 86.584 kb on + strand, within Dsui_0087 at 86.698 kb on + strand at 86.698 kb on + strand, within Dsui_0087 at 86.801 kb on - strand at 86.825 kb on - strand at 86.833 kb on + strand at 86.879 kb on + strand at 86.919 kb on + strand at 86.929 kb on + strand at 86.929 kb on + strand at 86.937 kb on - strand at 86.973 kb on + strand at 87.016 kb on + strand at 87.017 kb on - strand at 87.021 kb on + strand at 87.040 kb on - strand at 87.040 kb on - strand at 87.056 kb on + strand, within Dsui_0088 at 87.064 kb on - strand, within Dsui_0088 at 87.087 kb on + strand, within Dsui_0088 at 87.094 kb on - strand, within Dsui_0088 at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.144 kb on - strand at 87.144 kb on - strand at 87.180 kb on - strand at 87.237 kb on + strand at 87.250 kb on - strand at 87.278 kb on - strand at 87.284 kb on - strand at 87.323 kb on - strand at 87.330 kb on + strand, within Dsui_0089 at 87.340 kb on + strand, within Dsui_0089 at 87.343 kb on - strand, within Dsui_0089 at 87.402 kb on + strand, within Dsui_0089 at 87.490 kb on + strand, within Dsui_0089 at 87.549 kb on - strand, within Dsui_0089 at 87.564 kb on - strand, within Dsui_0089 at 87.587 kb on - strand, within Dsui_0089 at 87.768 kb on + strand, within Dsui_0089 at 87.783 kb on + strand, within Dsui_0089 at 87.818 kb on + strand, within Dsui_0089 at 87.882 kb on - strand, within Dsui_0089 at 87.882 kb on - strand, within Dsui_0089 at 87.910 kb on - strand, within Dsui_0089 at 87.910 kb on - strand, within Dsui_0089 at 87.976 kb on + strand, within Dsui_0089 at 87.990 kb on + strand, within Dsui_0089 at 88.064 kb on + strand, within Dsui_0089 at 88.067 kb on + strand at 88.122 kb on - strand, within Dsui_0089 at 88.145 kb on - strand, within Dsui_0089 at 88.145 kb on - strand, within Dsui_0089 at 88.145 kb on - strand, within Dsui_0089 at 88.198 kb on + strand, within Dsui_0089 at 88.218 kb on - strand, within Dsui_0089 at 88.228 kb on - strand, within Dsui_0089 at 88.284 kb on + strand, within Dsui_0089 at 88.292 kb on - strand, within Dsui_0089 at 88.297 kb on - strand, within Dsui_0089 at 88.297 kb on - strand, within Dsui_0089 at 88.354 kb on + strand, within Dsui_0089 at 88.425 kb on + strand, within Dsui_0089 at 88.433 kb on - strand, within Dsui_0089 at 88.433 kb on - strand, within Dsui_0089 at 88.454 kb on - strand, within Dsui_0089 at 88.545 kb on + strand, within Dsui_0089 at 88.557 kb on + strand at 88.631 kb on + strand, within Dsui_0089 at 88.719 kb on + strand at 88.729 kb on + strand at 88.738 kb on - strand at 88.743 kb on - strand at 88.781 kb on - strand at 88.781 kb on - strand at 88.781 kb on - strand at 88.782 kb on - strand at 88.782 kb on - strand at 88.782 kb on - strand at 88.812 kb on - strand at 88.820 kb on + strand at 88.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 86,184 + Dsui_0087 0.53 -1.6 86,218 + Dsui_0087 0.56 -2.0 86,284 + Dsui_0087 0.60 -1.3 86,292 - Dsui_0087 0.61 -3.3 86,394 - Dsui_0087 0.68 -2.1 86,433 - Dsui_0087 0.71 -2.7 86,455 - Dsui_0087 0.72 -2.8 86,544 - Dsui_0087 0.78 -2.7 86,554 - Dsui_0087 0.79 -2.1 86,564 - Dsui_0087 0.80 -1.0 86,584 + Dsui_0087 0.81 -2.4 86,698 + +0.7 86,698 + Dsui_0087 0.89 +0.0 86,801 - -2.1 86,825 - -2.5 86,833 + -2.6 86,879 + +0.0 86,919 + +0.6 86,929 + -0.2 86,929 + -0.6 86,937 - +0.1 86,973 + +0.1 87,016 + -0.7 87,017 - -0.3 87,021 + -0.1 87,040 - +0.4 87,040 - +0.1 87,056 + Dsui_0088 0.30 +0.9 87,064 - Dsui_0088 0.41 +0.2 87,087 + Dsui_0088 0.71 -0.3 87,094 - Dsui_0088 0.80 +0.2 87,136 + -1.9 87,136 + +0.1 87,136 + -1.0 87,136 + -0.8 87,136 + -0.3 87,136 + -0.9 87,144 - -1.5 87,144 - -0.2 87,180 - -0.0 87,237 + -0.5 87,250 - -0.7 87,278 - -0.2 87,284 - -0.0 87,323 - +0.6 87,330 + Dsui_0089 0.10 -1.3 87,340 + Dsui_0089 0.11 -0.5 87,343 - Dsui_0089 0.11 +0.6 87,402 + Dsui_0089 0.15 -1.3 87,490 + Dsui_0089 0.20 +0.0 87,549 - Dsui_0089 0.24 +0.2 87,564 - Dsui_0089 0.24 -0.0 87,587 - Dsui_0089 0.26 -0.3 87,768 + Dsui_0089 0.37 -0.1 87,783 + Dsui_0089 0.38 +0.5 87,818 + Dsui_0089 0.40 -0.9 87,882 - Dsui_0089 0.44 +0.1 87,882 - Dsui_0089 0.44 -0.2 87,910 - Dsui_0089 0.46 +1.4 87,910 - Dsui_0089 0.46 +0.1 87,976 + Dsui_0089 0.50 -1.7 87,990 + Dsui_0089 0.51 +0.0 88,064 + Dsui_0089 0.55 -1.9 88,067 + +0.5 88,122 - Dsui_0089 0.59 -0.9 88,145 - Dsui_0089 0.60 -0.1 88,145 - Dsui_0089 0.60 +0.3 88,145 - Dsui_0089 0.60 -0.0 88,198 + Dsui_0089 0.63 -1.1 88,218 - Dsui_0089 0.64 -0.2 88,228 - Dsui_0089 0.65 -0.7 88,284 + Dsui_0089 0.69 +0.1 88,292 - Dsui_0089 0.69 +0.1 88,297 - Dsui_0089 0.69 +0.0 88,297 - Dsui_0089 0.69 +0.2 88,354 + Dsui_0089 0.73 -0.5 88,425 + Dsui_0089 0.77 +0.1 88,433 - Dsui_0089 0.78 +0.0 88,433 - Dsui_0089 0.78 -0.1 88,454 - Dsui_0089 0.79 +0.2 88,545 + Dsui_0089 0.84 -1.0 88,557 + +0.5 88,631 + Dsui_0089 0.90 -1.6 88,719 + +0.5 88,729 + -0.3 88,738 - -0.2 88,743 - -0.2 88,781 - +0.2 88,781 - +0.2 88,781 - -0.9 88,782 - -0.1 88,782 - -0.3 88,782 - +0.0 88,812 - +0.2 88,820 + -1.1 88,844 + +0.7
Or see this region's nucleotide sequence