Strain Fitness in Shewanella oneidensis MR-1 around SOA0078

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0077 and SOA0078 are separated by 199 nucleotidesSOA0078 and SOA0079 overlap by 8 nucleotidesSOA0079 and SO_A0080 are separated by 394 nucleotides SOA0077: SOA0077 - site-specific recombinase, resolvase family (NCBI ptt file), at 60,346 to 60,981 SOA0077 SOA0078: SOA0078 - conserved hypothetical protein (NCBI ptt file), at 61,181 to 61,423 SOA0078 SOA0079: SOA0079 - conserved hypothetical protein (NCBI ptt file), at 61,416 to 61,715 SOA0079 SO_A0080: SO_A0080 - hypothetical protein (NCBI), at 62,110 to 62,595 _A0080 Position (kb) 61 62Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 60.184 kb on - strandat 60.185 kb on - strandat 60.185 kb on - strandat 60.185 kb on - strandat 60.185 kb on - strandat 60.288 kb on + strandat 60.293 kb on + strandat 60.293 kb on + strandat 60.301 kb on - strandat 60.301 kb on - strandat 60.306 kb on - strandat 60.334 kb on + strandat 60.345 kb on - strandat 60.353 kb on + strandat 60.359 kb on - strandat 60.359 kb on - strandat 60.359 kb on - strandat 60.361 kb on + strandat 60.365 kb on + strandat 60.365 kb on + strandat 60.369 kb on - strandat 60.373 kb on + strandat 60.373 kb on + strandat 60.373 kb on + strandat 60.373 kb on + strandat 60.373 kb on + strandat 60.373 kb on + strandat 60.373 kb on + strandat 60.373 kb on + strandat 60.373 kb on - strandat 60.381 kb on - strandat 60.381 kb on - strandat 60.400 kb on + strandat 60.410 kb on + strand, within SOA0077at 60.417 kb on + strand, within SOA0077at 60.429 kb on + strand, within SOA0077at 60.430 kb on + strand, within SOA0077at 60.437 kb on - strand, within SOA0077at 60.439 kb on - strand, within SOA0077at 60.453 kb on + strand, within SOA0077at 60.489 kb on - strand, within SOA0077at 60.489 kb on - strand, within SOA0077at 60.491 kb on + strand, within SOA0077at 60.500 kb on + strand, within SOA0077at 60.508 kb on - strand, within SOA0077at 60.513 kb on - strand, within SOA0077at 60.544 kb on - strand, within SOA0077at 60.651 kb on + strand, within SOA0077at 60.657 kb on - strand, within SOA0077at 60.659 kb on - strand, within SOA0077at 60.692 kb on - strand, within SOA0077at 60.693 kb on - strand, within SOA0077at 60.713 kb on - strand, within SOA0077at 60.713 kb on - strand, within SOA0077at 60.744 kb on - strand, within SOA0077at 60.769 kb on + strand, within SOA0077at 60.769 kb on + strand, within SOA0077at 60.777 kb on + strand, within SOA0077at 60.777 kb on + strand, within SOA0077at 60.777 kb on + strand, within SOA0077at 60.785 kb on - strand, within SOA0077at 60.828 kb on + strand, within SOA0077at 60.871 kb on + strand, within SOA0077at 60.876 kb on - strand, within SOA0077at 60.876 kb on - strand, within SOA0077at 60.876 kb on - strand, within SOA0077at 60.890 kb on + strand, within SOA0077at 60.903 kb on - strand, within SOA0077at 60.957 kb on + strandat 60.982 kb on + strandat 61.027 kb on + strandat 61.080 kb on + strandat 61.088 kb on - strandat 61.088 kb on - strandat 61.114 kb on + strandat 61.365 kb on - strand, within SOA0078at 61.379 kb on + strand, within SOA0078at 61.387 kb on - strand, within SOA0078at 61.399 kb on + strandat 61.433 kb on - strandat 61.440 kb on + strandat 61.448 kb on - strand, within SOA0079at 61.448 kb on - strand, within SOA0079at 61.448 kb on - strand, within SOA0079at 61.502 kb on + strand, within SOA0079at 61.504 kb on + strand, within SOA0079at 61.504 kb on + strand, within SOA0079at 61.512 kb on - strand, within SOA0079at 61.528 kb on - strand, within SOA0079at 61.528 kb on - strand, within SOA0079at 61.540 kb on + strand, within SOA0079at 61.540 kb on + strand, within SOA0079at 61.550 kb on + strand, within SOA0079at 61.550 kb on + strand, within SOA0079at 61.550 kb on + strand, within SOA0079at 61.550 kb on + strand, within SOA0079at 61.550 kb on + strand, within SOA0079at 61.550 kb on + strand, within SOA0079at 61.558 kb on - strand, within SOA0079at 61.558 kb on - strand, within SOA0079at 61.558 kb on - strand, within SOA0079at 61.560 kb on + strand, within SOA0079at 61.568 kb on - strand, within SOA0079at 61.710 kb on + strandat 61.712 kb on + strandat 61.717 kb on + strandat 61.753 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.755 kb on + strandat 61.761 kb on - strandat 61.763 kb on - strandat 61.763 kb on - strandat 61.763 kb on - strandat 61.763 kb on - strandat 61.763 kb on - strandat 61.763 kb on - strandat 61.763 kb on - strandat 61.779 kb on + strandat 61.787 kb on - strandat 61.787 kb on - strandat 61.789 kb on + strandat 61.797 kb on - strandat 61.797 kb on - strandat 61.797 kb on - strandat 61.797 kb on - strandat 61.827 kb on + strandat 61.895 kb on + strandat 61.937 kb on + strandat 61.937 kb on + strandat 61.939 kb on + strandat 61.939 kb on + strandat 61.945 kb on - strandat 61.947 kb on + strandat 61.947 kb on - strandat 61.956 kb on + strandat 61.956 kb on + strandat 61.961 kb on + strandat 62.004 kb on + strandat 62.004 kb on + strandat 62.004 kb on + strandat 62.009 kb on + strandat 62.017 kb on - strandat 62.017 kb on - strandat 62.029 kb on + strandat 62.039 kb on + strandat 62.039 kb on + strandat 62.047 kb on - strandat 62.047 kb on - strandat 62.048 kb on + strandat 62.058 kb on + strandat 62.060 kb on + strandat 62.079 kb on + strandat 62.087 kb on + strandat 62.088 kb on - strandat 62.095 kb on - strandat 62.095 kb on - strandat 62.095 kb on - strandat 62.095 kb on - strandat 62.095 kb on - strandat 62.095 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.163 kb on - strand, within SO_A0080at 62.184 kb on + strand, within SO_A0080at 62.209 kb on + strand, within SO_A0080at 62.216 kb on - strand, within SO_A0080at 62.217 kb on - strand, within SO_A0080at 62.219 kb on + strand, within SO_A0080at 62.221 kb on - strand, within SO_A0080at 62.226 kb on - strand, within SO_A0080at 62.295 kb on - strand, within SO_A0080at 62.322 kb on + strand, within SO_A0080at 62.328 kb on + strand, within SO_A0080at 62.336 kb on - strand, within SO_A0080at 62.375 kb on - strand, within SO_A0080at 62.380 kb on - strand, within SO_A0080at 62.385 kb on - strand, within SO_A0080at 62.390 kb on + strand, within SO_A0080at 62.398 kb on - strand, within SO_A0080at 62.398 kb on - strand, within SO_A0080at 62.410 kb on + strand, within SO_A0080at 62.410 kb on + strand, within SO_A0080at 62.415 kb on + strand, within SO_A0080at 62.418 kb on - strand, within SO_A0080

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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60,184 - +0.3
60,185 - +0.2
60,185 - -0.6
60,185 - -0.1
60,185 - +0.4
60,288 + +0.1
60,293 + -0.3
60,293 + -0.3
60,301 - -0.2
60,301 - -0.2
60,306 - -0.4
60,334 + +0.2
60,345 - -1.1
60,353 + -0.4
60,359 - -0.4
60,359 - +0.5
60,359 - +0.0
60,361 + -0.6
60,365 + -0.1
60,365 + +1.3
60,369 - +0.6
60,373 + +0.3
60,373 + +0.2
60,373 + +0.3
60,373 + -0.2
60,373 + +0.0
60,373 + -0.3
60,373 + +0.1
60,373 + -0.0
60,373 - -0.1
60,381 - -0.1
60,381 - -0.2
60,400 + +0.1
60,410 + SOA0077 0.10 -1.4
60,417 + SOA0077 0.11 -1.2
60,429 + SOA0077 0.13 +0.5
60,430 + SOA0077 0.13 -0.2
60,437 - SOA0077 0.14 -0.5
60,439 - SOA0077 0.15 -0.4
60,453 + SOA0077 0.17 -0.1
60,489 - SOA0077 0.22 +0.2
60,489 - SOA0077 0.22 +0.2
60,491 + SOA0077 0.23 +0.3
60,500 + SOA0077 0.24 -0.5
60,508 - SOA0077 0.25 -0.3
60,513 - SOA0077 0.26 +0.7
60,544 - SOA0077 0.31 -0.4
60,651 + SOA0077 0.48 +0.6
60,657 - SOA0077 0.49 +0.2
60,659 - SOA0077 0.49 -0.6
60,692 - SOA0077 0.54 -0.3
60,693 - SOA0077 0.55 -0.5
60,713 - SOA0077 0.58 -0.3
60,713 - SOA0077 0.58 -2.0
60,744 - SOA0077 0.63 +0.4
60,769 + SOA0077 0.67 +0.1
60,769 + SOA0077 0.67 +0.4
60,777 + SOA0077 0.68 -0.1
60,777 + SOA0077 0.68 -1.7
60,777 + SOA0077 0.68 +0.9
60,785 - SOA0077 0.69 +0.0
60,828 + SOA0077 0.76 +0.0
60,871 + SOA0077 0.83 -2.1
60,876 - SOA0077 0.83 +1.6
60,876 - SOA0077 0.83 +0.3
60,876 - SOA0077 0.83 -0.5
60,890 + SOA0077 0.86 +0.4
60,903 - SOA0077 0.88 -0.6
60,957 + +0.0
60,982 + -0.1
61,027 + -0.8
61,080 + +0.3
61,088 - -0.0
61,088 - +0.1
61,114 + -0.4
61,365 - SOA0078 0.76 -0.2
61,379 + SOA0078 0.81 -3.1
61,387 - SOA0078 0.85 -0.1
61,399 + +0.2
61,433 - -0.6
61,440 + -0.2
61,448 - SOA0079 0.11 +0.1
61,448 - SOA0079 0.11 -0.4
61,448 - SOA0079 0.11 +0.3
61,502 + SOA0079 0.29 +0.1
61,504 + SOA0079 0.29 +0.1
61,504 + SOA0079 0.29 +0.0
61,512 - SOA0079 0.32 +0.1
61,528 - SOA0079 0.37 -0.1
61,528 - SOA0079 0.37 -0.1
61,540 + SOA0079 0.41 +0.1
61,540 + SOA0079 0.41 +0.2
61,550 + SOA0079 0.45 +0.7
61,550 + SOA0079 0.45 -0.3
61,550 + SOA0079 0.45 +0.3
61,550 + SOA0079 0.45 -0.4
61,550 + SOA0079 0.45 +0.0
61,550 + SOA0079 0.45 +0.1
61,558 - SOA0079 0.47 -0.1
61,558 - SOA0079 0.47 +0.4
61,558 - SOA0079 0.47 +0.1
61,560 + SOA0079 0.48 -1.0
61,568 - SOA0079 0.51 -0.5
61,710 + +0.4
61,712 + +0.3
61,717 + +0.2
61,753 + -0.2
61,755 + -0.7
61,755 + -0.2
61,755 + +0.2
61,755 + -0.0
61,755 + +0.8
61,755 + +0.3
61,755 + -1.0
61,755 + -0.1
61,755 + +0.1
61,761 - -0.1
61,763 - -0.2
61,763 - +0.1
61,763 - +0.1
61,763 - +0.2
61,763 - -0.1
61,763 - +0.6
61,763 - +0.3
61,779 + -0.3
61,787 - -0.3
61,787 - +0.6
61,789 + -0.0
61,797 - +0.7
61,797 - -0.2
61,797 - -0.4
61,797 - +0.2
61,827 + -0.3
61,895 + +0.2
61,937 + -0.7
61,937 + -0.0
61,939 + -0.2
61,939 + -0.2
61,945 - -0.1
61,947 + -0.1
61,947 - +0.1
61,956 + +0.2
61,956 + -0.1
61,961 + -0.2
62,004 + -0.1
62,004 + +0.1
62,004 + +0.1
62,009 + +0.1
62,017 - -0.3
62,017 - +1.0
62,029 + +0.2
62,039 + +0.0
62,039 + -0.1
62,047 - +0.2
62,047 - -0.7
62,048 + +0.2
62,058 + +0.3
62,060 + +0.0
62,079 + +0.2
62,087 + +0.1
62,088 - -0.9
62,095 - -4.2
62,095 - +0.3
62,095 - -0.1
62,095 - +0.2
62,095 - -1.2
62,095 - -0.2
62,097 - -0.3
62,097 - -0.7
62,097 - -0.2
62,163 - SO_A0080 0.11 -0.1
62,184 + SO_A0080 0.15 -0.1
62,209 + SO_A0080 0.20 +0.1
62,216 - SO_A0080 0.22 -0.5
62,217 - SO_A0080 0.22 -1.1
62,219 + SO_A0080 0.22 -0.1
62,221 - SO_A0080 0.23 +0.0
62,226 - SO_A0080 0.24 -0.3
62,295 - SO_A0080 0.38 +0.5
62,322 + SO_A0080 0.44 -0.8
62,328 + SO_A0080 0.45 +0.3
62,336 - SO_A0080 0.47 +0.5
62,375 - SO_A0080 0.55 -0.0
62,380 - SO_A0080 0.56 -0.2
62,385 - SO_A0080 0.57 -1.5
62,390 + SO_A0080 0.58 +0.3
62,398 - SO_A0080 0.59 -0.0
62,398 - SO_A0080 0.59 -0.1
62,410 + SO_A0080 0.62 -0.3
62,410 + SO_A0080 0.62 -0.2
62,415 + SO_A0080 0.63 -0.5
62,418 - SO_A0080 0.63 +0.3

Or see this region's nucleotide sequence