Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0004 and SOA0005 are separated by 63 nucleotides SOA0005 and SO_A0006 are separated by 17 nucleotides SO_A0006 and SO_A0007 are separated by 299 nucleotides
SOA0004: SOA0004 - type II DNA modification methyltransferase (NCBI ptt file), at 3,938 to 5,650
SOA0004
SOA0005: SOA0005 - hypothetical protein (NCBI ptt file), at 5,714 to 6,019
SOA0005
SO_A0006: SO_A0006 - ParA family protein (NCBI), at 6,037 to 6,813
_A0006
SO_A0007: SO_A0007 - hypothetical protein (NCBI), at 7,113 to 7,850
_A0007
Position (kb) 6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 5.117 kb on + strand, within SOA0004 at 5.126 kb on - strand, within SOA0004 at 5.207 kb on + strand, within SOA0004 at 5.208 kb on - strand, within SOA0004 at 5.354 kb on - strand, within SOA0004 at 5.550 kb on + strand at 5.567 kb on - strand at 5.568 kb on - strand at 5.569 kb on - strand at 5.675 kb on + strand at 5.699 kb on - strand at 5.701 kb on + strand at 5.709 kb on - strand at 5.709 kb on - strand at 5.720 kb on - strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.744 kb on - strand at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.751 kb on + strand, within SOA0005 at 5.751 kb on + strand, within SOA0005 at 5.751 kb on + strand, within SOA0005 at 5.754 kb on - strand, within SOA0005 at 5.757 kb on + strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.769 kb on + strand, within SOA0005 at 5.774 kb on + strand, within SOA0005 at 5.779 kb on - strand, within SOA0005 at 5.789 kb on + strand, within SOA0005 at 5.802 kb on + strand, within SOA0005 at 5.810 kb on - strand, within SOA0005 at 5.825 kb on + strand, within SOA0005 at 5.825 kb on + strand, within SOA0005 at 5.838 kb on + strand, within SOA0005 at 5.887 kb on + strand, within SOA0005 at 5.926 kb on - strand, within SOA0005 at 5.946 kb on + strand, within SOA0005 at 6.076 kb on + strand at 6.076 kb on + strand at 6.076 kb on + strand at 6.076 kb on + strand at 6.084 kb on - strand at 6.084 kb on - strand at 6.105 kb on + strand at 6.121 kb on + strand, within SO_A0006 at 6.121 kb on + strand, within SO_A0006 at 6.139 kb on + strand, within SO_A0006 at 6.139 kb on + strand, within SO_A0006 at 6.144 kb on + strand, within SO_A0006 at 6.145 kb on + strand, within SO_A0006 at 6.147 kb on - strand, within SO_A0006 at 6.189 kb on - strand, within SO_A0006 at 6.199 kb on + strand, within SO_A0006 at 6.220 kb on + strand, within SO_A0006 at 6.243 kb on + strand, within SO_A0006 at 6.254 kb on + strand, within SO_A0006 at 6.271 kb on + strand, within SO_A0006 at 6.318 kb on - strand, within SO_A0006 at 6.402 kb on + strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.463 kb on - strand, within SO_A0006 at 6.500 kb on - strand, within SO_A0006 at 6.509 kb on - strand, within SO_A0006 at 6.509 kb on - strand, within SO_A0006 at 6.510 kb on - strand, within SO_A0006 at 6.510 kb on - strand, within SO_A0006 at 6.553 kb on - strand, within SO_A0006 at 6.569 kb on + strand, within SO_A0006 at 6.569 kb on + strand, within SO_A0006 at 6.569 kb on + strand, within SO_A0006 at 6.574 kb on + strand, within SO_A0006 at 6.577 kb on - strand, within SO_A0006 at 6.579 kb on + strand, within SO_A0006 at 6.595 kb on - strand, within SO_A0006 at 6.622 kb on + strand, within SO_A0006 at 6.635 kb on + strand, within SO_A0006 at 6.759 kb on - strand at 6.769 kb on - strand at 6.815 kb on + strand at 6.820 kb on + strand at 6.823 kb on - strand at 6.939 kb on + strand at 7.004 kb on + strand at 7.004 kb on + strand at 7.004 kb on + strand at 7.012 kb on - strand at 7.035 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.038 kb on + strand at 7.043 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.206 kb on + strand, within SO_A0007 at 7.207 kb on + strand, within SO_A0007 at 7.215 kb on - strand, within SO_A0007 at 7.215 kb on - strand, within SO_A0007 at 7.303 kb on - strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.411 kb on - strand, within SO_A0007 at 7.439 kb on + strand, within SO_A0007 at 7.447 kb on - strand, within SO_A0007
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol% remove 5,117 + SOA0004 0.69 -0.8 5,126 - SOA0004 0.69 -0.6 5,207 + SOA0004 0.74 -0.4 5,208 - SOA0004 0.74 -0.3 5,354 - SOA0004 0.83 -0.2 5,550 + -1.1 5,567 - -0.8 5,568 - -2.0 5,569 - -0.6 5,675 + -0.8 5,699 - -1.1 5,701 + -1.2 5,709 - -1.3 5,709 - -0.7 5,720 - -0.8 5,738 + -0.6 5,738 + -0.0 5,738 + -0.3 5,738 + +0.2 5,738 + -1.4 5,738 + -0.6 5,738 + -0.7 5,738 + -0.9 5,738 + -0.5 5,738 + -0.9 5,738 + -0.5 5,744 - +0.4 5,746 - SOA0005 0.10 -1.0 5,746 - SOA0005 0.10 -0.8 5,746 - SOA0005 0.10 -0.8 5,746 - SOA0005 0.10 -0.9 5,746 - SOA0005 0.10 -0.0 5,746 - SOA0005 0.10 -2.0 5,746 - SOA0005 0.10 -0.4 5,746 - SOA0005 0.10 -1.0 5,746 - SOA0005 0.10 -1.4 5,746 - SOA0005 0.10 -1.3 5,746 - SOA0005 0.10 -1.5 5,746 - SOA0005 0.10 +0.1 5,746 - SOA0005 0.10 -1.3 5,746 - SOA0005 0.10 -0.7 5,751 + SOA0005 0.12 -1.1 5,751 + SOA0005 0.12 -0.4 5,751 + SOA0005 0.12 -0.6 5,754 - SOA0005 0.13 -1.5 5,757 + SOA0005 0.14 -0.5 5,759 - SOA0005 0.15 -1.9 5,759 - SOA0005 0.15 -1.0 5,759 - SOA0005 0.15 -0.1 5,759 - SOA0005 0.15 -1.1 5,769 + SOA0005 0.18 -0.4 5,774 + SOA0005 0.20 -0.3 5,779 - SOA0005 0.21 -1.6 5,789 + SOA0005 0.25 -1.5 5,802 + SOA0005 0.29 -0.9 5,810 - SOA0005 0.31 -1.1 5,825 + SOA0005 0.36 -1.5 5,825 + SOA0005 0.36 +0.3 5,838 + SOA0005 0.41 -1.1 5,887 + SOA0005 0.57 -0.6 5,926 - SOA0005 0.69 -0.9 5,946 + SOA0005 0.76 -1.4 6,076 + -1.6 6,076 + -0.9 6,076 + -1.2 6,076 + -0.1 6,084 - -0.7 6,084 - -1.1 6,105 + -0.2 6,121 + SO_A0006 0.11 -0.5 6,121 + SO_A0006 0.11 -1.1 6,139 + SO_A0006 0.13 -0.9 6,139 + SO_A0006 0.13 -0.7 6,144 + SO_A0006 0.14 -0.5 6,145 + SO_A0006 0.14 -0.8 6,147 - SO_A0006 0.14 -0.7 6,189 - SO_A0006 0.20 -1.3 6,199 + SO_A0006 0.21 -1.1 6,220 + SO_A0006 0.24 -0.4 6,243 + SO_A0006 0.27 -0.9 6,254 + SO_A0006 0.28 -0.7 6,271 + SO_A0006 0.30 -0.2 6,318 - SO_A0006 0.36 -1.1 6,402 + SO_A0006 0.47 -1.0 6,410 - SO_A0006 0.48 -0.9 6,410 - SO_A0006 0.48 -0.7 6,410 - SO_A0006 0.48 +0.2 6,410 - SO_A0006 0.48 -1.8 6,463 - SO_A0006 0.55 -0.3 6,500 - SO_A0006 0.60 -0.9 6,509 - SO_A0006 0.61 -1.1 6,509 - SO_A0006 0.61 -1.2 6,510 - SO_A0006 0.61 -1.4 6,510 - SO_A0006 0.61 +0.2 6,553 - SO_A0006 0.66 -0.4 6,569 + SO_A0006 0.68 -1.2 6,569 + SO_A0006 0.68 -0.7 6,569 + SO_A0006 0.68 -0.6 6,574 + SO_A0006 0.69 -0.7 6,577 - SO_A0006 0.69 -1.2 6,579 + SO_A0006 0.70 -0.8 6,595 - SO_A0006 0.72 -0.4 6,622 + SO_A0006 0.75 -1.4 6,635 + SO_A0006 0.77 -0.6 6,759 - -0.5 6,769 - +0.3 6,815 + -0.0 6,820 + -1.1 6,823 - -1.1 6,939 + -0.8 7,004 + -0.3 7,004 + -2.0 7,004 + -2.1 7,012 - +0.9 7,035 + -0.7 7,036 + -0.3 7,036 + -0.4 7,036 + -1.0 7,036 + +0.2 7,036 + -1.1 7,036 + -0.6 7,036 + -1.2 7,036 + -0.4 7,036 + -1.0 7,036 + -1.0 7,036 + -0.7 7,036 + -0.5 7,036 + -1.0 7,036 + -0.8 7,036 + -0.6 7,036 + -0.7 7,036 + -0.8 7,038 + -0.8 7,043 - -0.6 7,044 - -0.3 7,044 - -2.0 7,044 - +0.1 7,044 - -0.6 7,044 - -1.3 7,044 - +0.4 7,044 - -0.2 7,044 - -0.8 7,044 - -1.1 7,044 - -1.1 7,044 - -1.3 7,044 - -0.8 7,044 - -0.2 7,044 - -0.7 7,044 - -0.4 7,044 - -0.7 7,044 - -0.8 7,044 - -0.6 7,044 - -0.7 7,044 - -1.3 7,206 + SO_A0007 0.13 -1.0 7,207 + SO_A0007 0.13 -0.7 7,215 - SO_A0007 0.14 -0.4 7,215 - SO_A0007 0.14 -0.6 7,303 - SO_A0007 0.26 -0.8 7,366 + SO_A0007 0.34 -0.2 7,366 + SO_A0007 0.34 -0.8 7,366 + SO_A0007 0.34 +0.4 7,366 + SO_A0007 0.34 -0.4 7,366 + SO_A0007 0.34 -0.7 7,366 + SO_A0007 0.34 -0.2 7,366 + SO_A0007 0.34 -1.3 7,374 - SO_A0007 0.35 -0.6 7,374 - SO_A0007 0.35 -0.2 7,374 - SO_A0007 0.35 -0.6 7,374 - SO_A0007 0.35 +0.2 7,374 - SO_A0007 0.35 -0.3 7,374 - SO_A0007 0.35 -0.4 7,374 - SO_A0007 0.35 -0.5 7,411 - SO_A0007 0.40 -0.4 7,439 + SO_A0007 0.44 -1.2 7,447 - SO_A0007 0.45 -0.1
Or see this region's nucleotide sequence