Strain Fitness in Shewanella oneidensis MR-1 around SO4383

Experiment: Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 7.5 vol%
4,577,032	-		SO4381	0.70	-0.2
4,577,032	-		SO4381	0.70	-0.2
4,577,046	-		SO4381	0.72	-0.5
4,577,047	+		SO4381	0.73	-0.2
4,577,056	-		SO4381	0.74	-0.1
4,577,075	+		SO4381	0.78	-0.8
4,577,152	-				-0.2
4,577,176	+				-0.2
4,577,176	+				+0.1
4,577,181	+				-0.1
4,577,184	-				-0.4
4,577,184	-				-0.4
4,577,197	-				+0.6
4,577,197	-				-0.4
4,577,202	+				-0.1
4,577,202	+				+0.9
4,577,210	-				-0.9
4,577,210	-				+0.1
4,577,324	+				-1.0
4,577,355	+				+0.0
4,577,355	+				-0.5
4,577,355	+				-0.2
4,577,363	-				-0.3
4,577,363	-				-0.4
4,577,363	-				-0.3
4,577,417	+	fabG-2	SO4382	0.16	+0.0
4,577,430	+	fabG-2	SO4382	0.18	+0.9
4,577,451	+	fabG-2	SO4382	0.21	+0.7
4,577,451	+	fabG-2	SO4382	0.21	-0.2
4,577,453	-	fabG-2	SO4382	0.21	-0.5
4,577,453	-	fabG-2	SO4382	0.21	+0.3
4,577,473	-	fabG-2	SO4382	0.24	-0.7
4,577,495	+	fabG-2	SO4382	0.27	-0.3
4,577,566	+	fabG-2	SO4382	0.37	-0.7
4,577,616	+	fabG-2	SO4382	0.44	-0.4
4,577,619	-	fabG-2	SO4382	0.44	-3.1
4,577,626	+	fabG-2	SO4382	0.45	-1.1
4,577,659	+	fabG-2	SO4382	0.49	-0.4
4,577,664	+	fabG-2	SO4382	0.50	-0.7
4,577,686	+	fabG-2	SO4382	0.53	-0.2
4,577,728	-	fabG-2	SO4382	0.59	-0.1
4,577,739	+	fabG-2	SO4382	0.60	-0.2
4,577,752	+	fabG-2	SO4382	0.62	-0.3
4,577,764	+	fabG-2	SO4382	0.64	-0.7
4,577,772	-	fabG-2	SO4382	0.65	+0.2
4,577,772	-	fabG-2	SO4382	0.65	-1.4
4,577,790	+	fabG-2	SO4382	0.67	-1.5
4,577,802	+	fabG-2	SO4382	0.69	-0.9
4,577,802	+	fabG-2	SO4382	0.69	+0.2
4,577,802	+	fabG-2	SO4382	0.69	-0.6
4,577,802	+	fabG-2	SO4382	0.69	-0.2
4,577,802	+	fabG-2	SO4382	0.69	-0.2
4,577,802	+	fabG-2	SO4382	0.69	+0.4
4,577,802	+	fabG-2	SO4382	0.69	+0.2
4,577,802	+	fabG-2	SO4382	0.69	-0.1
4,577,802	+	fabG-2	SO4382	0.69	+0.1
4,577,810	-	fabG-2	SO4382	0.70	-0.7
4,577,810	-	fabG-2	SO4382	0.70	-0.6
4,577,810	-	fabG-2	SO4382	0.70	+0.1
4,577,810	-	fabG-2	SO4382	0.70	-1.5
4,577,810	-	fabG-2	SO4382	0.70	+0.0
4,577,887	+	fabG-2	SO4382	0.81	-1.1
4,577,887	+	fabG-2	SO4382	0.81	-0.7
4,577,887	+	fabG-2	SO4382	0.81	-0.3
4,577,887	+	fabG-2	SO4382	0.81	-0.1
4,577,895	-	fabG-2	SO4382	0.82	-0.0
4,577,895	-	fabG-2	SO4382	0.82	-1.3
4,578,014	+				+0.4
4,578,101	+				-0.4
4,578,137	-				+0.0
4,578,219	+	fabF-2	SO4383	0.15	-0.5
4,578,219	+	fabF-2	SO4383	0.15	-0.8
4,578,227	-	fabF-2	SO4383	0.16	-0.6
4,578,353	-	fabF-2	SO4383	0.26	-0.5
4,578,395	-	fabF-2	SO4383	0.29	-0.0
4,578,418	+	fabF-2	SO4383	0.31	+0.4
4,578,454	-	fabF-2	SO4383	0.34	-0.7
4,578,463	-	fabF-2	SO4383	0.35	-0.2
4,578,481	-	fabF-2	SO4383	0.36	-0.3
4,578,510	+	fabF-2	SO4383	0.38	-0.3
4,578,523	+	fabF-2	SO4383	0.39	-1.0
4,578,577	-	fabF-2	SO4383	0.44	+1.0
4,578,614	-	fabF-2	SO4383	0.47	-0.6
4,578,634	+	fabF-2	SO4383	0.48	-0.5
4,578,635	-	fabF-2	SO4383	0.48	-0.6
4,578,655	+	fabF-2	SO4383	0.50	-0.8
4,578,733	-	fabF-2	SO4383	0.56	-0.6
4,578,745	-	fabF-2	SO4383	0.57	+0.5
4,578,745	-	fabF-2	SO4383	0.57	-0.3
4,578,812	-	fabF-2	SO4383	0.62	-0.5
4,578,871	-	fabF-2	SO4383	0.67	-1.1
4,578,871	-	fabF-2	SO4383	0.67	-0.3
4,578,906	+	fabF-2	SO4383	0.70	-0.3
4,579,047	-	fabF-2	SO4383	0.81	-0.6
4,579,055	+	fabF-2	SO4383	0.81	-0.4
4,579,055	+	fabF-2	SO4383	0.81	-0.0
4,579,055	+	fabF-2	SO4383	0.81	+0.2
4,579,055	+	fabF-2	SO4383	0.81	-0.6
4,579,055	+	fabF-2	SO4383	0.81	+0.6
4,579,062	+	fabF-2	SO4383	0.82	-0.3
4,579,063	-	fabF-2	SO4383	0.82	-0.5
4,579,070	-	fabF-2	SO4383	0.83	-0.6
4,579,088	+	fabF-2	SO4383	0.84	-0.7
4,579,194	+				-0.1
4,579,206	+				+0.7
4,579,220	-				-0.3
4,579,224	+				-0.8
4,579,255	-				-0.3
4,579,312	-				+0.2
4,579,337	-				+0.1
4,579,337	-				-0.2
4,579,343	+				+0.5
4,579,346	-				-0.0
4,579,351	-				+0.4
4,579,364	+				+0.6
4,579,372	-				-0.2
4,579,374	+		SO4384	0.10	+0.1
4,579,479	+		SO4384	0.24	+0.1
4,579,487	-		SO4384	0.25	-0.4
4,579,560	+		SO4384	0.35	-0.3
4,579,560	+		SO4384	0.35	+0.2
4,579,568	-		SO4384	0.36	+0.1
4,579,568	-		SO4384	0.36	+0.2
4,579,581	+		SO4384	0.38	+0.2
4,579,581	+		SO4384	0.38	-0.9
4,579,703	-		SO4384	0.54	+0.7
4,579,852	+		SO4384	0.74	+0.2
4,579,860	-		SO4384	0.75	+0.4
4,579,874	+		SO4384	0.77	-0.3
4,579,882	-		SO4384	0.78	+0.7
4,579,885	-		SO4384	0.79	-0.4
4,579,893	-		SO4384	0.80	+0.1
4,579,909	+		SO4384	0.82	-0.1
4,579,919	+		SO4384	0.83	+0.2
4,579,919	+		SO4384	0.83	+0.2
4,579,927	-		SO4384	0.84	-0.3
4,579,927	-		SO4384	0.84	-0.0
4,579,927	-		SO4384	0.84	-0.2
4,579,927	-		SO4384	0.84	-0.2
4,579,942	+		SO4384	0.86	+0.3
4,579,962	-		SO4384	0.89	-0.1
4,579,973	-				-0.6
4,579,990	-				-0.1
4,579,990	-				-0.3
4,580,013	+				-0.1
4,580,013	+				+0.1
4,580,021	-				-0.2
4,580,021	-				-0.2
4,580,036	+				+1.0
4,580,065	-				+1.0
4,580,076	+				+0.1
4,580,107	+				-0.2
4,580,130	-				+0.3
4,580,132	+				+0.2
4,580,132	-				+0.3
4,580,157	-				-0.3
4,580,204	+				-0.2
4,580,213	-				+0.4
4,580,213	-				-0.1
4,580,226	+				+0.8
4,580,234	-				+0.1
4,580,234	-				-0.0