Strain Fitness in Shewanella oneidensis MR-1 around SO3560

Experiment: Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 7.5 vol%
3,717,880	-	gshA	SO3559	0.52	-0.5
3,717,982	-	gshA	SO3559	0.58	-1.1
3,718,358	+	gshA	SO3559	0.81	-1.8
3,718,402	+	gshA	SO3559	0.83	+1.0
3,718,410	-	gshA	SO3559	0.84	-1.0
3,718,410	-	gshA	SO3559	0.84	+0.2
3,718,410	-	gshA	SO3559	0.84	-2.2
3,718,524	-				-1.9
3,718,580	-				+0.6
3,718,610	-				+0.2
3,718,746	+				+0.4
3,718,746	+				-0.3
3,718,754	+				-0.1
3,718,778	-				+0.6
3,718,844	+				+0.4
3,718,906	+				-0.4
3,718,914	-				-0.8
3,719,130	+				-1.3
3,719,138	-				-0.8
3,719,163	+				-0.9
3,719,315	+		SO3560	0.15	-1.1
3,719,337	+		SO3560	0.16	+0.5
3,719,345	-		SO3560	0.16	-1.2
3,719,424	-		SO3560	0.19	-1.2
3,719,465	-		SO3560	0.21	-0.7
3,719,470	-		SO3560	0.21	-0.4
3,719,544	-		SO3560	0.23	-1.2
3,719,585	+		SO3560	0.25	-0.9
3,719,588	-		SO3560	0.25	-0.9
3,719,632	+		SO3560	0.26	-0.7
3,719,685	+		SO3560	0.28	-1.4
3,719,693	-		SO3560	0.29	-1.1
3,719,761	-		SO3560	0.31	-1.1
3,719,854	-		SO3560	0.34	-2.0
3,719,908	+		SO3560	0.36	-0.2
3,719,956	+		SO3560	0.38	-0.2
3,719,964	-		SO3560	0.38	-0.9
3,719,964	-		SO3560	0.38	-0.8
3,720,060	+		SO3560	0.41	-1.1
3,720,118	+		SO3560	0.43	-1.7
3,720,256	+		SO3560	0.48	-0.6
3,720,334	-		SO3560	0.51	-1.7
3,720,347	-		SO3560	0.52	-0.4
3,720,347	-		SO3560	0.52	-1.6
3,720,355	-		SO3560	0.52	-1.5
3,720,357	+		SO3560	0.52	-1.5
3,720,465	+		SO3560	0.56	-0.3
3,720,572	+		SO3560	0.59	-0.5
3,720,590	-		SO3560	0.60	-2.1
3,720,599	-		SO3560	0.60	-0.4
3,720,615	+		SO3560	0.61	-0.1
3,720,623	-		SO3560	0.61	-0.7
3,720,624	+		SO3560	0.61	-1.5
3,720,630	+		SO3560	0.61	-1.2
3,720,695	-		SO3560	0.64	-1.8
3,720,704	+		SO3560	0.64	-0.7
3,720,709	+		SO3560	0.64	-0.8
3,720,712	-		SO3560	0.64	-0.3
3,720,907	+		SO3560	0.71	-1.2
3,720,916	-		SO3560	0.71	-0.7
3,720,928	-		SO3560	0.72	-0.8
3,720,973	-		SO3560	0.73	-0.8
3,721,020	+		SO3560	0.75	-0.9
3,721,075	+		SO3560	0.77	-1.0
3,721,111	-		SO3560	0.78	-0.5
3,721,111	-		SO3560	0.78	-1.3
3,721,117	-		SO3560	0.79	-1.4
3,721,117	-		SO3560	0.79	-0.6
3,721,280	-		SO3560	0.84	-1.1
3,721,285	-		SO3560	0.84	-0.5
3,721,423	-		SO3560	0.89	+0.1
3,721,423	-		SO3560	0.89	-0.6
3,721,444	+				-0.3
3,721,449	+				-1.0
3,721,528	-				-0.5
3,721,542	+				+0.3
3,721,712	+				-0.3
3,721,753	+				-0.8
3,721,761	-				-0.2
3,721,761	-				+0.0
3,721,984	+		SO3561	0.27	-0.1
3,721,992	-		SO3561	0.29	+0.4
3,721,992	-		SO3561	0.29	-0.0
3,721,992	-		SO3561	0.29	-0.1
3,721,992	-		SO3561	0.29	-0.6
3,721,992	-		SO3561	0.29	+1.3
3,722,017	+		SO3561	0.35	-0.5
3,722,036	+		SO3561	0.39	-0.9
3,722,044	-		SO3561	0.41	-0.9
3,722,069	+		SO3561	0.47	-0.6
3,722,069	+		SO3561	0.47	+0.1
3,722,142	+		SO3561	0.64	-0.1
3,722,142	+		SO3561	0.64	-0.1
3,722,150	-		SO3561	0.66	+1.1
3,722,150	-		SO3561	0.66	+0.2
3,722,157	-				-0.9
3,722,158	-		SO3561	0.68	-0.1
3,722,185	-		SO3561	0.74	-0.4
3,722,234	-		SO3561	0.85	+0.0
3,722,515	+				+0.1
3,722,523	-				+0.1
3,722,677	+				-0.2
3,722,685	-				+0.5