Strain Fitness in Shewanella oneidensis MR-1 around SO3435

Experiment: Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 7.5 vol%
3,578,958	+	nlpD	SO3433	0.71	-0.0
3,578,966	-	nlpD	SO3433	0.72	-0.1
3,579,092	+	nlpD	SO3433	0.86	+0.6
3,579,163	-				+1.1
3,579,185	-				-0.2
3,579,266	+				-0.2
3,579,316	+				-2.2
3,579,322	-				-1.5
3,579,324	-				-0.9
3,579,546	+	pcm	SO3434	0.43	-2.8
3,579,587	-	pcm	SO3434	0.49	-1.3
3,579,640	+	pcm	SO3434	0.58	-2.8
3,579,655	-	pcm	SO3434	0.60	-1.7
3,579,721	-	pcm	SO3434	0.70	-0.4
3,579,736	+	pcm	SO3434	0.73	-1.3
3,579,744	-	pcm	SO3434	0.74	-1.9
3,579,750	-	pcm	SO3434	0.75	+0.2
3,580,043	+	surE	SO3435	0.18	-4.8
3,580,141	+	surE	SO3435	0.31	-4.2
3,580,218	+	surE	SO3435	0.42	-2.2
3,580,218	+	surE	SO3435	0.42	-2.7
3,580,262	+	surE	SO3435	0.48	-4.3
3,580,411	+	surE	SO3435	0.68	-1.6
3,580,422	-	surE	SO3435	0.69	-1.0
3,580,429	-	surE	SO3435	0.70	-1.5
3,580,553	+	surE	SO3435	0.87	-0.7
3,580,652	+				-0.6
3,580,695	+				-0.4
3,580,703	-				-0.8
3,580,733	-				-0.5
3,580,831	-		SO3436	0.16	+0.2
3,580,920	-		SO3436	0.24	-1.3
3,581,068	-		SO3436	0.37	+0.1
3,581,106	+		SO3436	0.41	-1.0
3,581,168	+		SO3436	0.46	-0.1
3,581,176	-		SO3436	0.47	-0.2
3,581,181	-		SO3436	0.48	-0.7
3,581,398	-		SO3436	0.67	-1.4
3,581,510	+		SO3436	0.77	-1.6
3,581,518	-		SO3436	0.78	-1.8
3,581,645	+		SO3436	0.89	-1.6