Strain Fitness in Shewanella oneidensis MR-1 around SO3430

Experiment: Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 7.5 vol%
3,572,474	+				+0.1
3,572,474	+				+0.1
3,572,482	-				+0.7
3,572,482	-				-0.0
3,572,482	-				+0.1
3,572,482	-				-0.2
3,572,482	-				+0.5
3,572,482	-				-0.0
3,572,482	-				-0.6
3,572,482	-				+0.3
3,572,482	-				+0.2
3,572,532	+				-0.1
3,572,539	-				-0.0
3,572,544	+				-0.5
3,572,584	+				+0.3
3,572,610	+				+0.3
3,572,686	-				+0.1
3,572,784	+	recX	SO3429	0.34	+0.1
3,572,792	-	recX	SO3429	0.36	+0.1
3,572,792	-	recX	SO3429	0.36	+0.7
3,572,895	+	recX	SO3429	0.63	+0.6
3,572,947	+	recX	SO3429	0.76	+0.4
3,572,947	+	recX	SO3429	0.76	+0.3
3,572,983	+	recX	SO3429	0.86	+0.3
3,572,991	-	recX	SO3429	0.88	-0.4
3,573,027	-				-0.6
3,573,063	-				-0.5
3,573,149	+				+0.1
3,573,157	-				+0.3
3,573,231	-				-0.1
3,573,319	+	recA	SO3430	0.16	-1.4
3,573,327	-	recA	SO3430	0.16	-1.6
3,573,445	-	recA	SO3430	0.27	-0.8
3,573,521	-	recA	SO3430	0.34	-0.2
3,573,534	+	recA	SO3430	0.36	-1.3
3,573,660	-	recA	SO3430	0.47	-0.1
3,573,670	-	recA	SO3430	0.48	-0.7
3,573,679	-	recA	SO3430	0.49	-2.9
3,573,689	+	recA	SO3430	0.50	-0.7
3,573,823	+	recA	SO3430	0.63	-1.9
3,573,855	-	recA	SO3430	0.66	-1.3
3,573,950	+	recA	SO3430	0.74	-2.0
3,573,955	+	recA	SO3430	0.75	-1.1
3,573,955	+	recA	SO3430	0.75	-1.4
3,573,955	+	recA	SO3430	0.75	+0.0
3,573,955	+	recA	SO3430	0.75	-1.8
3,573,963	-	recA	SO3430	0.76	-1.6
3,573,963	-	recA	SO3430	0.76	-0.4
3,573,963	-	recA	SO3430	0.76	-0.3
3,574,045	+	recA	SO3430	0.83	-2.0
3,574,236	+				-0.8
3,574,236	+				-0.4
3,574,236	+				-1.4
3,574,236	+				+0.1
3,574,244	-				-1.9
3,574,254	-				-2.0
3,574,255	-				-0.9
3,574,359	-				-0.8
3,574,415	+				-0.0
3,574,515	-				+0.5
3,574,546	+				-0.4
3,574,642	+				+0.5
3,574,650	-				-2.1
3,574,650	-				-0.1
3,574,672	+				-0.1
3,574,672	+				-1.0
3,574,697	+				-0.4
3,574,722	-				-0.5
3,574,723	-				+0.1
3,574,727	+				+0.2
3,574,773	-				-0.0
3,574,830	-				-0.5
3,574,836	+				-0.1
3,574,939	-	mutS	SO3431	0.13	-0.1
3,574,956	+	mutS	SO3431	0.14	-0.2
3,574,961	-	mutS	SO3431	0.14	+0.4