Strain Fitness in Shewanella oneidensis MR-1 around SO3293

Experiment: Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 7.5 vol%
3,436,624	+	guaA	SO3292	0.60	+0.1
3,436,711	-	guaA	SO3292	0.66	-0.2
3,436,839	+	guaA	SO3292	0.74	-0.5
3,436,882	+	guaA	SO3292	0.76	-0.4
3,436,882	+	guaA	SO3292	0.76	+0.9
3,436,882	-	guaA	SO3292	0.76	-0.2
3,436,890	-	guaA	SO3292	0.77	-0.9
3,436,900	-	guaA	SO3292	0.78	-0.3
3,436,973	+	guaA	SO3292	0.82	-1.3
3,436,973	+	guaA	SO3292	0.82	+0.4
3,437,098	-				+1.2
3,437,840	+	guaB	SO3293	0.32	-2.5
3,437,840	+	guaB	SO3293	0.32	-3.7
3,437,932	-	guaB	SO3293	0.38	-1.6
3,437,935	+	guaB	SO3293	0.39	-0.9
3,437,967	+				-1.6
3,438,044	+	guaB	SO3293	0.46	-1.5
3,438,117	+				+0.4
3,438,117	+	guaB	SO3293	0.51	-0.8
3,438,125	-	guaB	SO3293	0.52	+0.0
3,438,148	-	guaB	SO3293	0.53	-2.8
3,438,188	+	guaB	SO3293	0.56	-1.3
3,438,236	+				+0.8
3,438,244	-	guaB	SO3293	0.60	-2.0
3,438,248	+	guaB	SO3293	0.60	-0.0
3,438,256	-	guaB	SO3293	0.60	+0.1
3,438,429	-	guaB	SO3293	0.72	-0.2
3,438,532	-	guaB	SO3293	0.79	+0.8
3,438,731	+				-0.5
3,438,766	-				+0.8
3,438,766	-				-0.8
3,438,887	+				-0.3
3,438,887	+				+0.1
3,438,887	+				+0.1
3,438,895	-				-1.1
3,438,895	-				+0.2
3,438,895	-				+0.0
3,438,996	+				-0.1
3,439,082	+				-1.5
3,439,167	+	xseA	SO3294	0.16	+0.1
3,439,277	+	xseA	SO3294	0.24	-0.0
3,439,283	-	xseA	SO3294	0.24	-0.4
3,439,285	-	xseA	SO3294	0.24	-1.1
3,439,392	-	xseA	SO3294	0.32	+0.4
3,439,403	-	xseA	SO3294	0.33	-0.8
3,439,429	-	xseA	SO3294	0.35	-0.7
3,439,438	-	xseA	SO3294	0.36	+0.0
3,439,566	-	xseA	SO3294	0.45	-0.3
3,439,671	-	xseA	SO3294	0.53	+0.1
3,439,779	-	xseA	SO3294	0.61	-0.4
3,439,779	-	xseA	SO3294	0.61	-0.1
3,439,791	-	xseA	SO3294	0.62	+0.1
3,439,801	-	xseA	SO3294	0.63	-0.1
3,439,830	+	xseA	SO3294	0.65	+0.3
3,439,830	+	xseA	SO3294	0.65	-0.7