Strain Fitness in Shewanella oneidensis MR-1 around SO3183

Experiment: Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 7.5 vol%
3,321,451	+		SO3182	0.16	-1.3
3,321,473	+		SO3182	0.21	+0.6
3,321,483	+		SO3182	0.24	-0.6
3,321,497	-		SO3182	0.27	-1.4
3,321,519	+		SO3182	0.32	-1.1
3,321,564	-		SO3182	0.42	+1.0
3,321,566	-		SO3182	0.43	-0.6
3,321,570	+		SO3182	0.44	-1.4
3,321,576	-		SO3182	0.45	-0.6
3,321,577	+		SO3182	0.45	-0.2
3,321,599	-		SO3182	0.51	-1.2
3,321,602	+		SO3182	0.51	-0.2
3,321,602	+		SO3182	0.51	-1.4
3,321,609	+		SO3182	0.53	-1.4
3,321,610	-		SO3182	0.53	-1.2
3,321,610	-		SO3182	0.53	-2.7
3,321,610	-		SO3182	0.53	-1.6
3,321,625	+		SO3182	0.57	-2.1
3,321,625	+		SO3182	0.57	-1.8
3,321,625	+		SO3182	0.57	-0.7
3,321,625	+		SO3182	0.57	+0.2
3,321,625	+		SO3182	0.57	-1.1
3,321,625	+		SO3182	0.57	-1.3
3,321,626	-		SO3182	0.57	+0.4
3,321,628	+		SO3182	0.57	-1.4
3,321,631	-		SO3182	0.58	-1.5
3,321,633	-		SO3182	0.59	-1.3
3,321,633	-		SO3182	0.59	-1.2
3,321,633	-		SO3182	0.59	-1.5
3,321,633	-		SO3182	0.59	-0.5
3,321,633	-		SO3182	0.59	-1.3
3,321,633	-		SO3182	0.59	-0.5
3,321,633	-		SO3182	0.59	-0.9
3,321,633	-		SO3182	0.59	-1.1
3,321,636	-		SO3182	0.59	-0.4
3,321,676	+		SO3182	0.69	-2.2
3,321,684	-		SO3182	0.70	+0.1
3,321,723	+		SO3182	0.79	-1.7
3,321,731	-		SO3182	0.81	-1.5
3,321,738	-		SO3182	0.83	+0.0
3,321,842	+				-0.8
3,321,847	-				-0.7
3,321,850	-				-1.2
3,321,903	-		SO3183	0.12	-0.9
3,321,951	+		SO3183	0.17	-0.2
3,321,951	+		SO3183	0.17	+1.1
3,321,951	+		SO3183	0.17	-1.2
3,321,951	+		SO3183	0.17	-0.8
3,321,951	+		SO3183	0.17	-1.5
3,321,951	+		SO3183	0.17	-0.8
3,321,951	+		SO3183	0.17	-0.4
3,321,951	+		SO3183	0.17	-0.8
3,321,951	+		SO3183	0.17	-3.1
3,321,951	+		SO3183	0.17	+0.6
3,321,951	-		SO3183	0.17	-0.7
3,321,953	+		SO3183	0.17	-3.1
3,321,953	+		SO3183	0.17	-1.7
3,321,956	-		SO3183	0.17	-0.8
3,321,956	-		SO3183	0.17	-1.4
3,321,959	-		SO3183	0.18	-1.2
3,321,959	-		SO3183	0.18	-1.5
3,321,959	-		SO3183	0.18	-0.3
3,321,959	-		SO3183	0.18	-0.8
3,321,959	-		SO3183	0.18	-0.5
3,321,959	-		SO3183	0.18	-0.6
3,321,959	-		SO3183	0.18	-0.1
3,321,959	-		SO3183	0.18	-0.6
3,321,959	-		SO3183	0.18	+0.4
3,321,959	-		SO3183	0.18	-1.3
3,321,959	-		SO3183	0.18	-1.5
3,321,959	-		SO3183	0.18	-0.7
3,321,961	+		SO3183	0.18	-1.8
3,321,961	-		SO3183	0.18	-1.2
3,321,961	-		SO3183	0.18	-1.4
3,321,961	-		SO3183	0.18	-1.0
3,321,961	-		SO3183	0.18	-1.4
3,321,961	-		SO3183	0.18	-1.1
3,321,961	-		SO3183	0.18	-0.7
3,321,961	-		SO3183	0.18	-2.4
3,321,961	-		SO3183	0.18	+0.0
3,321,961	-		SO3183	0.18	-0.4
3,321,961	-		SO3183	0.18	-1.0
3,321,961	-		SO3183	0.18	-0.4
3,321,967	-		SO3183	0.19	-1.3
3,321,967	-		SO3183	0.19	-0.8
3,321,969	-		SO3183	0.19	-0.5
3,321,969	-		SO3183	0.19	-0.5
3,321,969	-		SO3183	0.19	-0.1
3,322,051	+		SO3183	0.27	-1.4
3,322,059	-		SO3183	0.28	-1.0
3,322,059	-		SO3183	0.28	-0.5
3,322,059	-		SO3183	0.28	-0.6
3,322,108	-		SO3183	0.33	-1.3
3,322,140	-		SO3183	0.37	-0.3
3,322,140	-		SO3183	0.37	-0.9
3,322,190	-		SO3183	0.42	-0.9
3,322,213	+		SO3183	0.44	-0.9
3,322,216	-		SO3183	0.45	-0.8
3,322,216	-		SO3183	0.45	-1.1
3,322,218	+		SO3183	0.45	-1.4
3,322,218	+		SO3183	0.45	-1.1
3,322,218	+		SO3183	0.45	+1.4
3,322,218	+		SO3183	0.45	-1.6
3,322,226	-		SO3183	0.46	-1.0
3,322,226	-		SO3183	0.46	-0.8
3,322,226	-		SO3183	0.46	-0.0
3,322,226	-		SO3183	0.46	-0.5
3,322,226	-		SO3183	0.46	-1.2
3,322,226	-		SO3183	0.46	-1.0
3,322,226	-		SO3183	0.46	-3.1
3,322,226	-		SO3183	0.46	-0.6
3,322,226	-		SO3183	0.46	-0.6
3,322,226	-		SO3183	0.46	-1.8
3,322,226	-		SO3183	0.46	-1.3
3,322,226	-		SO3183	0.46	+0.4
3,322,226	-		SO3183	0.46	-2.4
3,322,226	-		SO3183	0.46	-0.7
3,322,226	-		SO3183	0.46	-1.5
3,322,226	-		SO3183	0.46	-1.0
3,322,226	-		SO3183	0.46	-0.6
3,322,226	-		SO3183	0.46	-1.5
3,322,295	+		SO3183	0.53	-0.1
3,322,303	-		SO3183	0.54	-1.9
3,322,303	-		SO3183	0.54	-0.3
3,322,351	+		SO3183	0.59	-2.5
3,322,352	+		SO3183	0.59	-1.6
3,322,366	-		SO3183	0.60	-1.8
3,322,366	-		SO3183	0.60	-0.3
3,322,377	-		SO3183	0.62	-1.7
3,322,408	-		SO3183	0.65	-0.6
3,322,429	-		SO3183	0.67	-1.2
3,322,575	-		SO3183	0.82	+0.1
3,322,577	-		SO3183	0.83	-0.5
3,322,671	-				-0.8
3,322,671	-				-2.2
3,322,715	-				+1.6
3,322,717	+				-1.5
3,322,717	+				+0.4
3,322,717	+				-0.3
3,322,718	+				-2.1
3,322,718	+				-1.2
3,322,725	-				-1.2
3,322,726	-				-0.9
3,322,741	-				-0.2
3,322,776	+				-0.8
3,322,776	+				-0.7
3,322,776	+				+0.1
3,322,784	-				-0.2
3,322,784	-				-0.5
3,322,784	-				+0.2
3,322,784	-				+0.1
3,322,784	-				-0.3
3,322,784	-				-0.5
3,322,811	+				-1.6
3,322,830	+		SO3184	0.11	-3.2
3,322,835	+		SO3184	0.12	-0.4
3,322,838	-		SO3184	0.12	-0.9
3,322,843	-		SO3184	0.13	-0.8
3,322,857	+		SO3184	0.15	-1.8
3,322,865	-		SO3184	0.16	-1.6
3,322,867	+		SO3184	0.16	-1.2
3,322,867	-		SO3184	0.16	-1.7
3,322,911	-		SO3184	0.23	-0.3
3,322,959	+		SO3184	0.29	-2.4
3,322,967	-		SO3184	0.30	-0.9
3,322,968	-		SO3184	0.30	-2.6
3,322,968	-		SO3184	0.30	-0.8
3,322,973	+		SO3184	0.31	-1.5
3,322,973	+		SO3184	0.31	-1.4
3,322,980	+		SO3184	0.32	-1.5
3,322,981	-		SO3184	0.32	-1.5
3,322,981	-		SO3184	0.32	-1.0
3,322,981	-		SO3184	0.32	-0.6
3,322,986	-		SO3184	0.33	-1.1
3,323,019	+		SO3184	0.37	-2.6
3,323,019	+		SO3184	0.37	+1.0
3,323,019	+		SO3184	0.37	-1.5
3,323,019	+		SO3184	0.37	-1.1
3,323,019	+		SO3184	0.37	+0.0
3,323,019	+		SO3184	0.37	-2.3
3,323,019	+		SO3184	0.37	-1.6
3,323,019	+		SO3184	0.37	-2.3
3,323,019	+		SO3184	0.37	-4.1
3,323,019	+		SO3184	0.37	-1.6
3,323,019	+		SO3184	0.37	-1.9
3,323,019	+		SO3184	0.37	-1.9
3,323,019	+		SO3184	0.37	-1.7
3,323,019	+		SO3184	0.37	-2.5
3,323,019	+		SO3184	0.37	-1.8
3,323,019	+		SO3184	0.37	-1.1
3,323,019	+		SO3184	0.37	-1.3
3,323,019	+		SO3184	0.37	-2.4
3,323,019	+		SO3184	0.37	+0.1
3,323,019	+		SO3184	0.37	-3.3
3,323,019	+		SO3184	0.37	+0.8
3,323,019	+		SO3184	0.37	-0.4
3,323,019	+		SO3184	0.37	-0.3
3,323,019	+		SO3184	0.37	-2.9
3,323,019	+		SO3184	0.37	-2.5
3,323,019	+		SO3184	0.37	-2.7
3,323,019	+		SO3184	0.37	-0.6
3,323,019	+		SO3184	0.37	-3.1
3,323,019	+		SO3184	0.37	-1.5
3,323,019	+		SO3184	0.37	-2.2
3,323,019	+		SO3184	0.37	-2.8
3,323,019	+		SO3184	0.37	-2.1
3,323,019	+		SO3184	0.37	-2.1
3,323,019	+		SO3184	0.37	-1.6
3,323,019	+		SO3184	0.37	+0.1
3,323,019	+		SO3184	0.37	-2.5
3,323,019	+		SO3184	0.37	-1.4
3,323,021	-		SO3184	0.38	-1.5
3,323,027	-		SO3184	0.39	-2.0
3,323,027	-		SO3184	0.39	-1.2
3,323,027	-		SO3184	0.39	-1.6
3,323,027	-		SO3184	0.39	-1.6
3,323,027	-		SO3184	0.39	-1.6
3,323,027	-		SO3184	0.39	-0.7
3,323,027	-		SO3184	0.39	-1.2
3,323,027	-		SO3184	0.39	-1.2
3,323,027	-		SO3184	0.39	-1.3
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-2.2
3,323,027	-		SO3184	0.39	-0.3
3,323,027	-		SO3184	0.39	-2.7
3,323,027	-		SO3184	0.39	-1.3
3,323,027	-		SO3184	0.39	-2.0
3,323,027	-		SO3184	0.39	-1.5
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-2.2
3,323,027	-		SO3184	0.39	-1.4
3,323,027	-		SO3184	0.39	-1.4
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-1.1
3,323,027	-		SO3184	0.39	-1.9
3,323,027	-		SO3184	0.39	-1.1
3,323,027	-		SO3184	0.39	-0.4
3,323,027	-		SO3184	0.39	-3.4
3,323,027	-		SO3184	0.39	-0.2
3,323,027	-		SO3184	0.39	-0.3
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-1.0
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-1.1
3,323,027	-		SO3184	0.39	-1.5
3,323,027	-		SO3184	0.39	-1.5
3,323,027	-		SO3184	0.39	-1.3
3,323,027	-		SO3184	0.39	-1.9
3,323,027	-		SO3184	0.39	-0.5
3,323,027	-		SO3184	0.39	-1.5
3,323,027	-		SO3184	0.39	-1.0
3,323,027	-		SO3184	0.39	-1.6
3,323,027	-		SO3184	0.39	-2.8
3,323,027	-		SO3184	0.39	-0.8
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-1.9
3,323,027	-		SO3184	0.39	-2.1
3,323,027	-		SO3184	0.39	-2.0
3,323,027	-		SO3184	0.39	-1.6
3,323,027	-		SO3184	0.39	-0.5
3,323,027	-		SO3184	0.39	-0.6
3,323,027	-		SO3184	0.39	-2.3
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-1.2
3,323,027	-		SO3184	0.39	-1.9
3,323,027	-		SO3184	0.39	-1.1
3,323,027	-		SO3184	0.39	-1.2
3,323,027	-		SO3184	0.39	-1.1
3,323,027	-		SO3184	0.39	-1.8
3,323,027	-		SO3184	0.39	-2.9
3,323,027	-		SO3184	0.39	-0.7
3,323,027	-		SO3184	0.39	-2.1
3,323,027	-		SO3184	0.39	-1.7
3,323,027	-		SO3184	0.39	-1.5
3,323,027	-		SO3184	0.39	-1.2
3,323,027	-		SO3184	0.39	-2.1
3,323,027	-		SO3184	0.39	-2.5
3,323,027	-		SO3184	0.39	-2.0
3,323,027	-		SO3184	0.39	-2.4
3,323,027	-		SO3184	0.39	-2.0
3,323,027	-		SO3184	0.39	-2.1
3,323,027	-		SO3184	0.39	-1.3
3,323,109	+		SO3184	0.50	-0.2
3,323,109	+		SO3184	0.50	-2.4
3,323,109	+		SO3184	0.50	-1.0
3,323,117	-		SO3184	0.51	+0.5
3,323,117	-		SO3184	0.51	-0.6
3,323,117	-		SO3184	0.51	-2.5
3,323,117	-		SO3184	0.51	-2.7
3,323,117	-		SO3184	0.51	-1.7
3,323,117	-		SO3184	0.51	-1.8
3,323,117	-		SO3184	0.51	-0.6
3,323,142	+		SO3184	0.54	-1.1
3,323,142	+		SO3184	0.54	-1.3
3,323,142	+		SO3184	0.54	-1.7
3,323,150	-		SO3184	0.56	-1.4
3,323,150	-		SO3184	0.56	-1.5
3,323,150	-		SO3184	0.56	-0.1
3,323,150	-		SO3184	0.56	-0.5
3,323,150	-		SO3184	0.56	-0.3
3,323,154	+		SO3184	0.56	-1.4
3,323,154	+		SO3184	0.56	-1.9
3,323,154	+		SO3184	0.56	-0.9
3,323,162	-		SO3184	0.57	-1.6
3,323,162	-		SO3184	0.57	-1.8
3,323,162	-		SO3184	0.57	-1.5
3,323,162	-		SO3184	0.57	-1.8
3,323,162	-		SO3184	0.57	-0.8
3,323,185	-		SO3184	0.60	-2.4
3,323,215	-		SO3184	0.65	-1.8
3,323,251	-		SO3184	0.70	-0.5
3,323,256	-		SO3184	0.70	-1.6
3,323,256	-		SO3184	0.70	-1.3
3,323,256	-		SO3184	0.70	-0.2
3,323,301	+		SO3184	0.76	-1.1
3,323,309	-		SO3184	0.78	-0.7
3,323,309	-		SO3184	0.78	-2.4
3,323,309	-		SO3184	0.78	-0.6
3,323,314	+		SO3184	0.78	-1.6
3,323,314	+		SO3184	0.78	-2.5
3,323,323	-		SO3184	0.80	-0.2
3,323,358	-		SO3184	0.84	-1.4
3,323,371	+		SO3184	0.86	-3.0
3,323,377	-		SO3184	0.87	-0.9
3,323,379	-		SO3184	0.87	-2.0
3,323,416	+				-1.5
3,323,429	+				-1.2
3,323,481	-				-1.6
3,323,489	-				+0.2
3,323,519	+				-2.4
3,323,527	+				-2.5
3,323,527	+				-2.9
3,323,527	+				-2.2
3,323,527	-				-0.9
3,323,530	+				-3.8
3,323,532	-				-0.6
3,323,532	-				-0.6
3,323,535	+				-0.6
3,323,535	-				-3.1
3,323,535	-				-1.2
3,323,537	+				-2.9
3,323,538	-				-1.7
3,323,538	-				-0.9
3,323,538	-				-1.1
3,323,543	-				-1.1
3,323,545	-				-0.0
3,323,545	-				-0.8
3,323,545	-				-1.6
3,323,551	+				-2.9
3,323,587	+		SO3185	0.11	-0.7
3,323,587	+		SO3185	0.11	+0.7
3,323,587	+		SO3185	0.11	-2.7
3,323,589	-		SO3185	0.11	-2.5
3,323,595	-		SO3185	0.12	-1.2
3,323,595	-		SO3185	0.12	-1.8
3,323,599	+		SO3185	0.12	-2.1
3,323,607	-		SO3185	0.13	-2.3
3,323,607	-		SO3185	0.13	-1.4
3,323,607	-		SO3185	0.13	-2.0
3,323,607	-		SO3185	0.13	-1.1
3,323,614	-		SO3185	0.13	-3.0
3,323,614	-		SO3185	0.13	-1.2
3,323,648	-		SO3185	0.17	-1.2
3,323,681	-		SO3185	0.20	-1.0