Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3171 and SO3172 are separated by 130 nucleotides SO3172 and SO3173 are separated by 2 nucleotides SO3173 and SO3174 are separated by 35 nucleotides
SO3171: SO3171 - polysaccharide biosynthesis protein (NCBI ptt file), at 3,307,620 to 3,309,560
SO3171
SO3172: SO3172 - galactosyl transferase (NCBI ptt file), at 3,309,691 to 3,310,248
SO3172
SO3173: SO3173 - UDP-galactose 4-epimerase, putative (NCBI ptt file), at 3,310,251 to 3,311,180
SO3173
SO3174: SO3174 - glycosyl transferase, group 1 family protein (NCBI ptt file), at 3,311,216 to 3,312,349
SO3174
Position (kb)
3310
3311
3312 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3309.333 kb on + strand, within SO3171 at 3309.338 kb on + strand, within SO3171 at 3309.341 kb on - strand, within SO3171 at 3309.847 kb on + strand, within SO3172 at 3309.849 kb on - strand, within SO3172 at 3309.854 kb on + strand, within SO3172 at 3309.855 kb on - strand, within SO3172 at 3309.857 kb on - strand, within SO3172 at 3309.953 kb on + strand, within SO3172 at 3310.249 kb on + strand at 3310.328 kb on + strand at 3310.328 kb on + strand at 3310.336 kb on - strand at 3310.337 kb on - strand at 3310.338 kb on - strand at 3310.533 kb on - strand, within SO3173 at 3310.572 kb on - strand, within SO3173 at 3310.616 kb on + strand, within SO3173 at 3310.631 kb on - strand, within SO3173 at 3310.638 kb on + strand, within SO3173 at 3310.646 kb on - strand, within SO3173 at 3310.646 kb on - strand, within SO3173 at 3310.660 kb on + strand, within SO3173 at 3310.841 kb on + strand, within SO3173 at 3310.849 kb on - strand, within SO3173 at 3310.901 kb on + strand, within SO3173 at 3310.901 kb on + strand, within SO3173 at 3310.901 kb on + strand, within SO3173 at 3310.901 kb on + strand, within SO3173 at 3310.901 kb on + strand, within SO3173 at 3310.908 kb on + strand, within SO3173 at 3310.909 kb on - strand, within SO3173 at 3310.909 kb on - strand, within SO3173 at 3310.909 kb on - strand, within SO3173 at 3310.909 kb on - strand, within SO3173 at 3310.909 kb on - strand, within SO3173 at 3310.909 kb on - strand, within SO3173 at 3310.909 kb on - strand, within SO3173 at 3310.916 kb on - strand, within SO3173 at 3310.918 kb on + strand, within SO3173 at 3310.989 kb on + strand, within SO3173 at 3311.000 kb on + strand, within SO3173 at 3311.008 kb on - strand, within SO3173 at 3311.008 kb on - strand, within SO3173 at 3311.008 kb on - strand at 3311.008 kb on - strand, within SO3173 at 3311.008 kb on - strand, within SO3173 at 3311.010 kb on + strand, within SO3173 at 3311.023 kb on - strand, within SO3173 at 3311.077 kb on + strand, within SO3173 at 3311.142 kb on + strand at 3311.157 kb on + strand at 3311.176 kb on + strand at 3311.213 kb on + strand at 3311.215 kb on - strand at 3311.312 kb on + strand at 3311.313 kb on - strand at 3311.328 kb on - strand at 3311.346 kb on - strand, within SO3174 at 3311.386 kb on - strand, within SO3174 at 3311.409 kb on - strand, within SO3174 at 3311.422 kb on + strand, within SO3174 at 3311.422 kb on + strand, within SO3174 at 3311.422 kb on + strand, within SO3174 at 3311.422 kb on + strand, within SO3174 at 3311.430 kb on - strand, within SO3174 at 3311.432 kb on - strand, within SO3174 at 3311.438 kb on - strand, within SO3174 at 3311.457 kb on - strand, within SO3174 at 3311.457 kb on - strand, within SO3174 at 3311.471 kb on + strand, within SO3174 at 3311.479 kb on - strand, within SO3174 at 3311.484 kb on + strand, within SO3174 at 3311.535 kb on - strand, within SO3174 at 3311.642 kb on + strand, within SO3174 at 3311.642 kb on - strand, within SO3174 at 3311.642 kb on - strand, within SO3174 at 3311.650 kb on - strand, within SO3174 at 3311.659 kb on - strand, within SO3174 at 3311.666 kb on - strand, within SO3174 at 3311.676 kb on - strand, within SO3174 at 3311.693 kb on - strand, within SO3174 at 3311.693 kb on - strand, within SO3174 at 3311.749 kb on - strand, within SO3174 at 3311.761 kb on + strand, within SO3174 at 3311.761 kb on - strand, within SO3174 at 3311.769 kb on + strand, within SO3174 at 3311.777 kb on - strand, within SO3174 at 3311.777 kb on - strand, within SO3174 at 3311.787 kb on + strand, within SO3174 at 3311.787 kb on + strand, within SO3174 at 3311.787 kb on + strand, within SO3174 at 3311.795 kb on - strand, within SO3174 at 3311.795 kb on - strand, within SO3174 at 3311.795 kb on - strand, within SO3174 at 3311.795 kb on - strand, within SO3174 at 3311.815 kb on + strand, within SO3174 at 3311.817 kb on - strand, within SO3174 at 3311.817 kb on - strand, within SO3174 at 3311.838 kb on - strand, within SO3174 at 3311.838 kb on - strand, within SO3174 at 3311.852 kb on + strand, within SO3174 at 3311.861 kb on - strand, within SO3174 at 3311.870 kb on + strand, within SO3174 at 3311.876 kb on + strand, within SO3174 at 3311.876 kb on + strand, within SO3174 at 3311.884 kb on - strand, within SO3174 at 3311.884 kb on - strand, within SO3174 at 3311.890 kb on - strand, within SO3174 at 3311.905 kb on + strand, within SO3174 at 3311.931 kb on + strand, within SO3174 at 3311.963 kb on - strand, within SO3174 at 3312.021 kb on + strand, within SO3174 at 3312.029 kb on - strand, within SO3174 at 3312.033 kb on + strand, within SO3174 at 3312.033 kb on + strand, within SO3174 at 3312.033 kb on + strand, within SO3174 at 3312.033 kb on + strand, within SO3174 at 3312.033 kb on + strand, within SO3174 at 3312.041 kb on - strand, within SO3174 at 3312.046 kb on + strand, within SO3174 at 3312.046 kb on + strand, within SO3174 at 3312.054 kb on - strand, within SO3174 at 3312.054 kb on - strand, within SO3174 at 3312.069 kb on + strand, within SO3174 at 3312.136 kb on - strand, within SO3174 at 3312.136 kb on - strand, within SO3174 at 3312.137 kb on - strand, within SO3174 at 3312.180 kb on - strand, within SO3174 at 3312.180 kb on - strand, within SO3174 at 3312.180 kb on - strand, within SO3174
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol% remove 3,309,333 + SO3171 0.88 -0.9 3,309,338 + SO3171 0.89 -0.6 3,309,341 - SO3171 0.89 +0.0 3,309,847 + SO3172 0.28 -0.9 3,309,849 - SO3172 0.28 -0.0 3,309,854 + SO3172 0.29 -1.9 3,309,855 - SO3172 0.29 -0.0 3,309,857 - SO3172 0.30 -0.6 3,309,953 + SO3172 0.47 -0.0 3,310,249 + -0.8 3,310,328 + -0.8 3,310,328 + -0.6 3,310,336 - -1.2 3,310,337 - -0.9 3,310,338 - -0.7 3,310,533 - SO3173 0.30 -0.7 3,310,572 - SO3173 0.35 -1.1 3,310,616 + SO3173 0.39 -0.8 3,310,631 - SO3173 0.41 -0.1 3,310,638 + SO3173 0.42 +0.2 3,310,646 - SO3173 0.42 -1.0 3,310,646 - SO3173 0.42 -1.5 3,310,660 + SO3173 0.44 -0.7 3,310,841 + SO3173 0.63 -0.6 3,310,849 - SO3173 0.64 -0.8 3,310,901 + SO3173 0.70 -0.9 3,310,901 + SO3173 0.70 -0.4 3,310,901 + SO3173 0.70 +0.2 3,310,901 + SO3173 0.70 -1.8 3,310,901 + SO3173 0.70 -0.1 3,310,908 + SO3173 0.71 -1.3 3,310,909 - SO3173 0.71 -0.6 3,310,909 - SO3173 0.71 -1.1 3,310,909 - SO3173 0.71 -1.6 3,310,909 - SO3173 0.71 -1.5 3,310,909 - SO3173 0.71 -2.5 3,310,909 - SO3173 0.71 -0.8 3,310,909 - SO3173 0.71 -0.7 3,310,916 - SO3173 0.72 -1.1 3,310,918 + SO3173 0.72 -1.1 3,310,989 + SO3173 0.79 -0.8 3,311,000 + SO3173 0.81 -1.8 3,311,008 - SO3173 0.81 -0.8 3,311,008 - SO3173 0.81 -1.9 3,311,008 - +0.4 3,311,008 - SO3173 0.81 -0.6 3,311,008 - SO3173 0.81 -0.6 3,311,010 + SO3173 0.82 -0.3 3,311,023 - SO3173 0.83 -0.6 3,311,077 + SO3173 0.89 -0.6 3,311,142 + -1.2 3,311,157 + -1.5 3,311,176 + +0.6 3,311,213 + -1.0 3,311,215 - -0.2 3,311,312 + -0.8 3,311,313 - -0.4 3,311,328 - -0.7 3,311,346 - SO3174 0.11 -0.2 3,311,386 - SO3174 0.15 -1.0 3,311,409 - SO3174 0.17 -1.9 3,311,422 + SO3174 0.18 -0.8 3,311,422 + SO3174 0.18 -1.3 3,311,422 + SO3174 0.18 +0.6 3,311,422 + SO3174 0.18 -1.4 3,311,430 - SO3174 0.19 -0.8 3,311,432 - SO3174 0.19 -1.7 3,311,438 - SO3174 0.20 -2.0 3,311,457 - SO3174 0.21 -0.6 3,311,457 - SO3174 0.21 -1.0 3,311,471 + SO3174 0.22 -1.2 3,311,479 - SO3174 0.23 -1.2 3,311,484 + SO3174 0.24 -0.4 3,311,535 - SO3174 0.28 +1.1 3,311,642 + SO3174 0.38 -0.6 3,311,642 - SO3174 0.38 -1.3 3,311,642 - SO3174 0.38 +0.3 3,311,650 - SO3174 0.38 -1.0 3,311,659 - SO3174 0.39 -0.4 3,311,666 - SO3174 0.40 -0.4 3,311,676 - SO3174 0.41 +0.1 3,311,693 - SO3174 0.42 +0.6 3,311,693 - SO3174 0.42 -1.2 3,311,749 - SO3174 0.47 -1.0 3,311,761 + SO3174 0.48 -0.5 3,311,761 - SO3174 0.48 -0.2 3,311,769 + SO3174 0.49 -1.2 3,311,777 - SO3174 0.49 -1.4 3,311,777 - SO3174 0.49 -2.6 3,311,787 + SO3174 0.50 -0.7 3,311,787 + SO3174 0.50 -0.3 3,311,787 + SO3174 0.50 -1.4 3,311,795 - SO3174 0.51 +0.3 3,311,795 - SO3174 0.51 -1.4 3,311,795 - SO3174 0.51 -0.9 3,311,795 - SO3174 0.51 -1.0 3,311,815 + SO3174 0.53 -0.6 3,311,817 - SO3174 0.53 -0.6 3,311,817 - SO3174 0.53 -0.4 3,311,838 - SO3174 0.55 -2.3 3,311,838 - SO3174 0.55 -0.5 3,311,852 + SO3174 0.56 -0.2 3,311,861 - SO3174 0.57 +1.2 3,311,870 + SO3174 0.58 -0.1 3,311,876 + SO3174 0.58 -1.5 3,311,876 + SO3174 0.58 -0.4 3,311,884 - SO3174 0.59 -0.8 3,311,884 - SO3174 0.59 -1.2 3,311,890 - SO3174 0.59 -0.3 3,311,905 + SO3174 0.61 -3.0 3,311,931 + SO3174 0.63 -1.0 3,311,963 - SO3174 0.66 +0.0 3,312,021 + SO3174 0.71 -1.1 3,312,029 - SO3174 0.72 -1.8 3,312,033 + SO3174 0.72 -2.2 3,312,033 + SO3174 0.72 -0.6 3,312,033 + SO3174 0.72 -0.5 3,312,033 + SO3174 0.72 -0.6 3,312,033 + SO3174 0.72 -0.9 3,312,041 - SO3174 0.73 -0.7 3,312,046 + SO3174 0.73 -0.9 3,312,046 + SO3174 0.73 -1.3 3,312,054 - SO3174 0.74 -1.0 3,312,054 - SO3174 0.74 -0.1 3,312,069 + SO3174 0.75 -0.3 3,312,136 - SO3174 0.81 -0.9 3,312,136 - SO3174 0.81 -0.4 3,312,137 - SO3174 0.81 -0.3 3,312,180 - SO3174 0.85 +1.1 3,312,180 - SO3174 0.85 -0.8 3,312,180 - SO3174 0.85 -1.4
Or see this region's nucleotide sequence