Strain Fitness in Shewanella oneidensis MR-1 around SO3159

Experiment: Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 7.5 vol%
3,294,182	+		SO3157	0.76	-0.1
3,294,222	-		SO3157	0.81	-1.5
3,294,222	-		SO3157	0.81	-1.0
3,294,248	+		SO3157	0.85	-1.7
3,294,284	-				-0.3
3,294,284	-				-0.8
3,294,348	+				+0.5
3,294,348	+				+0.2
3,294,356	-				-1.2
3,294,393	+				-1.4
3,294,393	+				-0.3
3,294,419	+				-0.9
3,294,427	-				-1.4
3,294,449	+		SO3158	0.11	-1.7
3,294,526	+		SO3158	0.21	-1.2
3,294,598	+		SO3158	0.30	-1.2
3,294,751	-		SO3158	0.49	-0.6
3,294,887	+		SO3158	0.67	-0.5
3,294,943	+		SO3158	0.74	-0.6
3,295,194	+				-0.2
3,295,199	+				-0.6
3,295,199	+				-1.2
3,295,207	-				-0.5
3,295,249	+				-1.2
3,295,264	-				-0.8
3,295,381	-				-0.7
3,295,652	+		SO3159	0.21	-1.0
3,295,652	+		SO3159	0.21	-1.4
3,295,655	-		SO3159	0.21	-0.9
3,295,765	+		SO3159	0.26	-0.6
3,295,765	+		SO3159	0.26	-0.9
3,295,765	+		SO3159	0.26	+1.0
3,295,773	-		SO3159	0.26	-1.6
3,295,773	-		SO3159	0.26	+0.2
3,295,773	-		SO3159	0.26	-0.9
3,295,774	-		SO3159	0.26	-1.3
3,295,795	-		SO3159	0.27	-1.9
3,295,966	-		SO3159	0.34	-0.5
3,295,984	-		SO3159	0.35	-1.3
3,295,984	-		SO3159	0.35	-0.1
3,295,984	-		SO3159	0.35	-2.2
3,296,004	-		SO3159	0.36	-0.8
3,296,023	+		SO3159	0.37	-0.0
3,296,033	+		SO3159	0.37	-0.7
3,296,077	-		SO3159	0.39	-0.9
3,296,161	+		SO3159	0.43	-1.0
3,296,228	+		SO3159	0.45	-0.9
3,296,246	-		SO3159	0.46	-0.6
3,296,413	+		SO3159	0.53	-1.5
3,296,458	+		SO3159	0.55	-0.6
3,296,617	-		SO3159	0.62	-1.8
3,296,659	+		SO3159	0.63	-0.3
3,296,708	-		SO3159	0.66	-0.5
3,296,817	+		SO3159	0.70	+0.0
3,296,825	-		SO3159	0.70	-0.6
3,296,881	+		SO3159	0.73	-1.0
3,296,881	-		SO3159	0.73	-2.7
3,296,889	-		SO3159	0.73	-0.9
3,297,031	+		SO3159	0.79	-0.6
3,297,031	+		SO3159	0.79	-0.6
3,297,034	-		SO3159	0.79	-0.4
3,297,117	+		SO3159	0.83	+0.1
3,297,190	+		SO3159	0.86	-1.0
3,297,190	+		SO3159	0.86	-1.6
3,297,199	-		SO3159	0.86	-0.0
3,297,262	+		SO3159	0.89	-0.8
3,297,368	-				-1.3
3,297,378	-				-0.9
3,297,381	+				+0.4
3,298,109	+		SO3161	0.18	-0.9
3,298,146	+		SO3161	0.37	-0.4
3,298,178	+		SO3161	0.54	-2.1
3,298,444	-				+1.5
3,298,501	-				-1.0
3,298,505	-				+0.1