Strain Fitness in Shewanella oneidensis MR-1 around SO2472
Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dimethyl Sulfoxide 7.5 vol% |
---|---|---|---|---|---|
remove | |||||
2,594,244 | + | -1.0 | |||
2,594,257 | + | -2.9 | |||
2,594,257 | + | -3.5 | |||
2,594,342 | + | SO2472 | 0.16 | -2.9 | |
2,594,801 | + | SO2472 | 0.77 | -4.3 | |
2,594,801 | + | SO2472 | 0.77 | -2.8 | |
2,594,970 | + | +0.1 | |||
2,595,096 | + | +0.2 | |||
2,595,146 | + | SO2473 | 0.12 | +0.6 | |
2,595,148 | + | SO2473 | 0.12 | +1.0 | |
2,595,290 | + | SO2473 | 0.29 | +1.5 | |
2,595,458 | + | SO2473 | 0.49 | -0.2 | |
2,595,518 | - | SO2473 | 0.57 | -0.5 | |
2,595,597 | - | SO2473 | 0.66 | -0.0 | |
2,595,657 | + | SO2473 | 0.73 | +0.0 | |
2,595,703 | + | SO2473 | 0.79 | -0.0 | |
2,595,706 | - | SO2473 | 0.79 | -0.1 | |
2,595,721 | - | SO2473 | 0.81 | -0.8 | |
2,595,734 | - | SO2473 | 0.82 | -0.8 | |
2,595,858 | - | -0.2 | |||
2,595,908 | + | +0.9 |
Or see this region's nucleotide sequence