Strain Fitness in Shewanella oneidensis MR-1 around SO2365
Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dimethyl Sulfoxide 7.5 vol% |
---|---|---|---|---|---|
remove | |||||
2,470,725 | - | ccoN | SO2364 | 0.46 | -0.4 |
2,470,879 | + | ccoN | SO2364 | 0.57 | -1.4 |
2,470,879 | + | ccoN | SO2364 | 0.57 | -1.1 |
2,470,969 | - | ccoN | SO2364 | 0.63 | -2.4 |
2,471,135 | + | ccoN | SO2364 | 0.75 | -1.3 |
2,471,434 | - | -0.5 | |||
2,471,453 | + | -2.0 | |||
2,471,546 | - | +0.2 | |||
2,471,649 | + | -0.4 | |||
2,472,038 | - | SO2365 | 0.65 | +0.5 | |
2,472,124 | - | SO2365 | 0.83 | -1.1 | |
2,472,124 | - | SO2365 | 0.83 | +1.2 | |
2,472,158 | + | SO2365 | 0.90 | -2.0 | |
2,472,296 | + | -0.2 | |||
2,472,402 | - | -0.7 | |||
2,472,407 | + | -0.4 | |||
2,472,440 | - | -0.2 | |||
2,472,639 | - | SO2366 | 0.21 | -0.8 | |
2,472,700 | + | SO2366 | 0.25 | +0.1 | |
2,472,703 | - | SO2366 | 0.25 | -0.8 | |
2,472,817 | - | SO2366 | 0.32 | +0.5 | |
2,472,899 | - | SO2366 | 0.38 | +0.6 | |
2,473,063 | + | SO2366 | 0.48 | +0.9 |
Or see this region's nucleotide sequence