Strain Fitness in Shewanella oneidensis MR-1 around SO0647

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0645 and SO0646 overlap by 14 nucleotidesSO0646 and SO0647 overlap by 1 nucleotidesSO0647 and SO0648 are separated by 4 nucleotidesSO0648 and SO0649 are separated by 18 nucleotides SO0645: SO0645 - hypothetical protein (NCBI ptt file), at 673,483 to 674,028 SO0645 SO0646: SO0646 - hypothetical protein (NCBI ptt file), at 674,015 to 674,509 SO0646 SO0647: SO0647 - hypothetical protein (NCBI ptt file), at 674,509 to 674,724 SO0647 SO0648: SO0648 - conserved hypothetical protein (NCBI ptt file), at 674,729 to 675,355 SO0648 SO0649: SO0649 - hypothetical protein (NCBI ptt file), at 675,374 to 675,646 SO0649 Position (kb) 674 675Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 673.511 kb on + strandat 673.511 kb on + strandat 673.511 kb on - strandat 673.539 kb on - strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strandat 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.571 kb on + strand, within SO0645at 673.571 kb on + strand, within SO0645at 673.571 kb on + strand, within SO0645at 673.579 kb on - strand, within SO0645at 673.589 kb on - strand, within SO0645at 673.626 kb on + strand, within SO0645at 673.709 kb on - strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.837 kb on + strand, within SO0645at 673.902 kb on - strand, within SO0645at 673.948 kb on - strand, within SO0645at 674.039 kb on + strandat 674.066 kb on - strand, within SO0646at 674.118 kb on - strand, within SO0646at 674.186 kb on + strand, within SO0646at 674.188 kb on + strand, within SO0646at 674.188 kb on + strand, within SO0646at 674.193 kb on + strand, within SO0646at 674.194 kb on - strand, within SO0646at 674.201 kb on - strand, within SO0646at 674.262 kb on + strand, within SO0646at 674.270 kb on - strand, within SO0646at 674.332 kb on + strand, within SO0646at 674.446 kb on + strand, within SO0646at 674.446 kb on + strand, within SO0646at 674.446 kb on + strand, within SO0646at 674.454 kb on - strand, within SO0646at 674.467 kb on + strandat 674.511 kb on - strandat 674.528 kb on + strandat 674.531 kb on - strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.601 kb on + strand, within SO0647at 674.652 kb on + strand, within SO0647at 674.652 kb on + strand, within SO0647at 674.660 kb on - strand, within SO0647at 674.704 kb on - strandat 674.828 kb on - strand, within SO0648at 674.850 kb on - strand, within SO0648at 674.900 kb on - strand, within SO0648at 674.938 kb on + strand, within SO0648at 674.943 kb on + strand, within SO0648at 674.948 kb on + strand, within SO0648at 674.958 kb on - strand, within SO0648at 675.012 kb on + strand, within SO0648at 675.045 kb on + strand, within SO0648at 675.147 kb on + strand, within SO0648at 675.302 kb on + strandat 675.345 kb on - strandat 675.350 kb on + strandat 675.365 kb on - strandat 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strandat 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.465 kb on - strand, within SO0649at 675.476 kb on + strand, within SO0649at 675.476 kb on + strand, within SO0649at 675.484 kb on - strand, within SO0649at 675.484 kb on - strand, within SO0649at 675.515 kb on + strand, within SO0649at 675.525 kb on - strand, within SO0649at 675.537 kb on + strand, within SO0649at 675.547 kb on + strand, within SO0649at 675.658 kb on - strandat 675.683 kb on + strandat 675.691 kb on - strandat 675.701 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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673,511 + -0.3
673,511 + -0.1
673,511 - +0.1
673,539 - SO0645 0.10 -0.4
673,558 + SO0645 0.14 -0.4
673,558 + SO0645 0.14 -0.3
673,558 + -0.5
673,558 + SO0645 0.14 -0.8
673,558 + SO0645 0.14 +0.4
673,558 + SO0645 0.14 -0.1
673,558 + SO0645 0.14 +0.9
673,558 + SO0645 0.14 +0.4
673,566 - SO0645 0.15 -0.0
673,566 - SO0645 0.15 +0.8
673,566 - SO0645 0.15 -0.5
673,566 - SO0645 0.15 -1.0
673,566 - SO0645 0.15 +0.3
673,571 + SO0645 0.16 +0.1
673,571 + SO0645 0.16 +0.2
673,571 + SO0645 0.16 +0.5
673,579 - SO0645 0.18 +0.5
673,589 - SO0645 0.19 +0.1
673,626 + SO0645 0.26 -1.4
673,709 - SO0645 0.41 -0.9
673,778 + SO0645 0.54 -0.4
673,778 + SO0645 0.54 -1.3
673,778 + SO0645 0.54 -0.7
673,778 + SO0645 0.54 +0.2
673,786 - SO0645 0.55 -0.3
673,786 - SO0645 0.55 -0.3
673,786 - SO0645 0.55 -1.2
673,786 - SO0645 0.55 +0.6
673,786 - SO0645 0.55 -0.2
673,837 + SO0645 0.65 -0.4
673,902 - SO0645 0.77 -0.1
673,948 - SO0645 0.85 -0.1
674,039 + +0.4
674,066 - SO0646 0.10 -0.5
674,118 - SO0646 0.21 +0.1
674,186 + SO0646 0.35 -0.3
674,188 + SO0646 0.35 -0.9
674,188 + SO0646 0.35 +0.2
674,193 + SO0646 0.36 -2.3
674,194 - SO0646 0.36 +0.2
674,201 - SO0646 0.38 -0.9
674,262 + SO0646 0.50 -1.2
674,270 - SO0646 0.52 -0.5
674,332 + SO0646 0.64 -0.8
674,446 + SO0646 0.87 -0.8
674,446 + SO0646 0.87 -0.7
674,446 + SO0646 0.87 -1.8
674,454 - SO0646 0.89 -0.3
674,467 + -1.6
674,511 - -0.3
674,528 + -1.5
674,531 - SO0647 0.10 -0.3
674,546 + SO0647 0.17 -0.8
674,546 + SO0647 0.17 -0.6
674,546 + SO0647 0.17 -2.5
674,546 + SO0647 0.17 -2.3
674,546 + SO0647 0.17 -1.6
674,546 + SO0647 0.17 -1.6
674,546 + SO0647 0.17 -1.8
674,546 + SO0647 0.17 -1.3
674,546 + SO0647 0.17 -0.8
674,546 + SO0647 0.17 -1.3
674,546 + SO0647 0.17 -2.5
674,546 + SO0647 0.17 -1.4
674,546 + SO0647 0.17 -1.3
674,554 - SO0647 0.21 -0.2
674,554 - SO0647 0.21 -0.1
674,554 - SO0647 0.21 -0.2
674,554 - SO0647 0.21 +0.7
674,554 - SO0647 0.21 +1.5
674,554 - SO0647 0.21 -0.4
674,554 - SO0647 0.21 +0.1
674,554 - SO0647 0.21 +0.8
674,554 - SO0647 0.21 +0.2
674,554 - SO0647 0.21 +0.3
674,554 - SO0647 0.21 -0.2
674,554 - SO0647 0.21 -0.3
674,554 - SO0647 0.21 +0.6
674,554 - SO0647 0.21 +0.0
674,554 - SO0647 0.21 -0.1
674,601 + SO0647 0.43 -0.4
674,652 + SO0647 0.66 -1.1
674,652 + SO0647 0.66 -1.5
674,660 - SO0647 0.70 +0.4
674,704 - -0.5
674,828 - SO0648 0.16 +0.6
674,850 - SO0648 0.19 +0.3
674,900 - SO0648 0.27 -0.6
674,938 + SO0648 0.33 +0.8
674,943 + SO0648 0.34 -1.0
674,948 + SO0648 0.35 +0.6
674,958 - SO0648 0.37 +0.0
675,012 + SO0648 0.45 -1.0
675,045 + SO0648 0.50 -0.3
675,147 + SO0648 0.67 -0.1
675,302 + -3.6
675,345 - -0.6
675,350 + -1.7
675,365 - +0.2
675,416 + SO0649 0.15 -0.2
675,416 + SO0649 0.15 -1.4
675,416 + SO0649 0.15 -0.4
675,416 + +2.1
675,416 + SO0649 0.15 -1.6
675,416 + SO0649 0.15 -0.8
675,416 + SO0649 0.15 -1.1
675,416 + SO0649 0.15 -0.8
675,416 + SO0649 0.15 -1.2
675,416 + SO0649 0.15 -0.6
675,416 + SO0649 0.15 -1.0
675,416 + SO0649 0.15 -0.4
675,416 + SO0649 0.15 -0.4
675,416 + SO0649 0.15 -0.5
675,416 + SO0649 0.15 -0.7
675,416 + SO0649 0.15 +0.1
675,416 + SO0649 0.15 -0.8
675,416 + SO0649 0.15 +0.0
675,416 + SO0649 0.15 -0.6
675,416 + SO0649 0.15 -2.1
675,416 + SO0649 0.15 -1.3
675,416 + SO0649 0.15 -1.1
675,424 - SO0649 0.18 +0.3
675,424 - SO0649 0.18 -0.6
675,424 - SO0649 0.18 -0.4
675,424 - SO0649 0.18 -0.7
675,424 - SO0649 0.18 +0.6
675,424 - SO0649 0.18 +0.9
675,424 - SO0649 0.18 -0.2
675,424 - SO0649 0.18 +0.2
675,424 - SO0649 0.18 -0.9
675,424 - SO0649 0.18 -2.4
675,424 - SO0649 0.18 +0.2
675,424 - SO0649 0.18 -0.2
675,424 - SO0649 0.18 -0.1
675,424 - SO0649 0.18 +0.5
675,424 - SO0649 0.18 +0.1
675,424 - SO0649 0.18 +0.6
675,424 - SO0649 0.18 -0.7
675,424 - SO0649 0.18 -0.1
675,424 - SO0649 0.18 +0.1
675,424 - SO0649 0.18 +0.3
675,424 - SO0649 0.18 +0.7
675,465 - SO0649 0.33 +0.2
675,476 + SO0649 0.37 -1.2
675,476 + SO0649 0.37 -1.3
675,484 - SO0649 0.40 +0.4
675,484 - SO0649 0.40 -1.0
675,515 + SO0649 0.52 -0.4
675,525 - SO0649 0.55 +0.3
675,537 + SO0649 0.60 -0.7
675,547 + SO0649 0.63 -3.9
675,658 - -0.3
675,683 + -0.3
675,691 - -0.1
675,701 + +0.3

Or see this region's nucleotide sequence