Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmF-1 and dsbE are separated by 11 nucleotides dsbE and ccmH overlap by 4 nucleotides ccmH and SO0269 overlap by 4 nucleotides
SO0266: ccmF-1 - cytochrome c-type biogenesis protein CcmF (NCBI ptt file), at 265,671 to 267,650
ccmF-1
SO0267: dsbE - thiol:disulfide interchange protein DsbE (NCBI ptt file), at 267,662 to 268,216
dsbE
SO0268: ccmH - cytochrome c-type biogenesis protein CcmH (NCBI ptt file), at 268,213 to 268,692
ccmH
SO0269: SO0269 - thioredoxin, putative (NCBI ptt file), at 268,689 to 269,273
SO0269
Position (kb) 268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 267.258 kb on + strand, within ccmF-1 at 267.266 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.362 kb on + strand, within ccmF-1 at 267.573 kb on + strand at 267.959 kb on - strand, within dsbE at 267.959 kb on - strand, within dsbE at 268.050 kb on + strand, within dsbE at 268.058 kb on - strand, within dsbE at 268.122 kb on + strand, within dsbE at 268.158 kb on + strand, within dsbE at 268.159 kb on + strand, within dsbE at 268.206 kb on + strand at 268.246 kb on + strand at 268.278 kb on + strand, within ccmH at 268.285 kb on + strand, within ccmH at 268.286 kb on - strand, within ccmH at 268.400 kb on - strand, within ccmH at 268.426 kb on + strand, within ccmH at 268.428 kb on + strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.560 kb on - strand, within ccmH at 268.582 kb on - strand, within ccmH at 268.608 kb on + strand, within ccmH at 268.832 kb on - strand, within SO0269 at 268.862 kb on + strand, within SO0269 at 268.870 kb on - strand, within SO0269 at 268.890 kb on - strand, within SO0269 at 268.945 kb on + strand, within SO0269 at 268.953 kb on - strand, within SO0269 at 268.953 kb on - strand, within SO0269 at 268.985 kb on + strand, within SO0269 at 268.993 kb on - strand, within SO0269 at 269.110 kb on + strand, within SO0269 at 269.118 kb on - strand, within SO0269 at 269.231 kb on + strand at 269.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol% remove 267,258 + ccmF-1 SO0266 0.80 -0.9 267,266 - ccmF-1 SO0266 0.81 -0.8 267,310 - ccmF-1 SO0266 0.83 -2.3 267,310 - ccmF-1 SO0266 0.83 -1.5 267,310 - ccmF-1 SO0266 0.83 -0.6 267,362 + ccmF-1 SO0266 0.85 -1.3 267,573 + -0.5 267,959 - dsbE SO0267 0.54 -1.4 267,959 - dsbE SO0267 0.54 -2.3 268,050 + dsbE SO0267 0.70 -1.3 268,058 - dsbE SO0267 0.71 -2.0 268,122 + dsbE SO0267 0.83 -2.0 268,158 + dsbE SO0267 0.89 -1.2 268,159 + dsbE SO0267 0.90 -1.6 268,206 + -0.7 268,246 + -1.2 268,278 + ccmH SO0268 0.14 -2.1 268,285 + ccmH SO0268 0.15 -0.9 268,286 - ccmH SO0268 0.15 -3.5 268,400 - ccmH SO0268 0.39 -1.2 268,426 + ccmH SO0268 0.44 -0.8 268,428 + ccmH SO0268 0.45 -1.2 268,436 - ccmH SO0268 0.46 -0.7 268,436 - ccmH SO0268 0.46 -2.1 268,436 - ccmH SO0268 0.46 -1.1 268,446 + ccmH SO0268 0.49 -1.4 268,446 + ccmH SO0268 0.49 -1.7 268,446 + ccmH SO0268 0.49 -3.4 268,446 + ccmH SO0268 0.49 +0.1 268,446 + ccmH SO0268 0.49 +0.1 268,446 + ccmH SO0268 0.49 +0.6 268,446 + ccmH SO0268 0.49 -0.9 268,454 - ccmH SO0268 0.50 -0.4 268,454 - ccmH SO0268 0.50 -2.5 268,560 - ccmH SO0268 0.72 +0.3 268,582 - ccmH SO0268 0.77 -1.2 268,608 + ccmH SO0268 0.82 -0.2 268,832 - SO0269 0.24 -0.1 268,862 + SO0269 0.30 +0.6 268,870 - SO0269 0.31 +0.3 268,890 - SO0269 0.34 +1.4 268,945 + SO0269 0.44 -0.3 268,953 - SO0269 0.45 -0.3 268,953 - SO0269 0.45 +0.5 268,985 + SO0269 0.51 +0.0 268,993 - SO0269 0.52 +0.3 269,110 + SO0269 0.72 +0.4 269,118 - SO0269 0.73 -0.2 269,231 + +0.2 269,246 + -0.6
Or see this region's nucleotide sequence