Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08730

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08720 and PGA1_c08730 are separated by 74 nucleotidesPGA1_c08730 and PGA1_c08740 are separated by 113 nucleotides PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693 _c08720 PGA1_c08730: PGA1_c08730 - hypothetical protein, at 899,768 to 899,938 _c08730 PGA1_c08740: PGA1_c08740 - glutamate dehydrogenase GluD, at 900,052 to 901,482 _c08740 Position (kb) 899 900Strain fitness (log2 ratio) -2 -1 0 1 2at 898.778 kb on + strand, within PGA1_c08720at 898.793 kb on + strand, within PGA1_c08720at 898.900 kb on - strand, within PGA1_c08720at 898.952 kb on + strand, within PGA1_c08720at 898.960 kb on + strand, within PGA1_c08720at 898.960 kb on + strand, within PGA1_c08720at 898.960 kb on - strand, within PGA1_c08720at 898.968 kb on - strand, within PGA1_c08720at 898.968 kb on - strand, within PGA1_c08720at 898.970 kb on + strand, within PGA1_c08720at 899.018 kb on - strand, within PGA1_c08720at 899.018 kb on - strand, within PGA1_c08720at 899.035 kb on + strand, within PGA1_c08720at 899.035 kb on + strand, within PGA1_c08720at 899.035 kb on + strand, within PGA1_c08720at 899.035 kb on + strand, within PGA1_c08720at 899.035 kb on + strand, within PGA1_c08720at 899.040 kb on + strand, within PGA1_c08720at 899.043 kb on - strand, within PGA1_c08720at 899.043 kb on - strand, within PGA1_c08720at 899.043 kb on - strand, within PGA1_c08720at 899.043 kb on - strand, within PGA1_c08720at 899.048 kb on - strand, within PGA1_c08720at 899.067 kb on + strand, within PGA1_c08720at 899.072 kb on + strand, within PGA1_c08720at 899.073 kb on - strand, within PGA1_c08720at 899.075 kb on + strand, within PGA1_c08720at 899.075 kb on + strand, within PGA1_c08720at 899.080 kb on - strand, within PGA1_c08720at 899.083 kb on - strand, within PGA1_c08720at 899.109 kb on + strand, within PGA1_c08720at 899.158 kb on + strand, within PGA1_c08720at 899.265 kb on - strand, within PGA1_c08720at 899.274 kb on + strand, within PGA1_c08720at 899.276 kb on + strand, within PGA1_c08720at 899.277 kb on - strand, within PGA1_c08720at 899.321 kb on + strand, within PGA1_c08720at 899.399 kb on + strand, within PGA1_c08720at 899.409 kb on + strand, within PGA1_c08720at 899.417 kb on - strand, within PGA1_c08720at 899.457 kb on + strand, within PGA1_c08720at 899.457 kb on + strand, within PGA1_c08720at 899.457 kb on + strand, within PGA1_c08720at 899.465 kb on - strand, within PGA1_c08720at 899.465 kb on - strand, within PGA1_c08720at 899.471 kb on + strand, within PGA1_c08720at 899.480 kb on - strand, within PGA1_c08720at 899.484 kb on - strand, within PGA1_c08720at 899.502 kb on - strand, within PGA1_c08720at 899.504 kb on + strand, within PGA1_c08720at 899.514 kb on + strand, within PGA1_c08720at 899.522 kb on - strand, within PGA1_c08720at 899.548 kb on + strandat 899.555 kb on + strandat 899.580 kb on - strandat 899.580 kb on - strandat 899.585 kb on + strandat 899.626 kb on + strandat 899.644 kb on + strandat 899.647 kb on - strandat 899.649 kb on + strandat 899.649 kb on + strandat 899.657 kb on - strandat 899.657 kb on - strandat 899.689 kb on + strandat 899.711 kb on + strandat 899.717 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.719 kb on + strandat 899.724 kb on + strandat 899.725 kb on - strandat 899.727 kb on - strandat 899.727 kb on - strandat 899.727 kb on - strandat 899.727 kb on - strandat 899.727 kb on - strandat 899.727 kb on - strandat 899.727 kb on - strandat 899.732 kb on - strandat 899.755 kb on + strandat 899.756 kb on + strandat 899.756 kb on + strandat 899.764 kb on - strandat 899.764 kb on - strandat 899.764 kb on - strandat 899.795 kb on - strand, within PGA1_c08730at 899.840 kb on - strand, within PGA1_c08730at 899.840 kb on - strand, within PGA1_c08730at 899.852 kb on + strand, within PGA1_c08730at 899.853 kb on + strand, within PGA1_c08730at 899.857 kb on + strand, within PGA1_c08730at 899.860 kb on - strand, within PGA1_c08730at 899.862 kb on - strand, within PGA1_c08730at 899.890 kb on + strand, within PGA1_c08730at 899.906 kb on + strand, within PGA1_c08730at 899.923 kb on + strandat 900.003 kb on - strandat 900.012 kb on + strandat 900.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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898,778 + PGA1_c08720 0.46 -1.2
898,793 + PGA1_c08720 0.46 +1.4
898,900 - PGA1_c08720 0.53 -0.0
898,952 + PGA1_c08720 0.56 -1.8
898,960 + PGA1_c08720 0.56 +1.0
898,960 + PGA1_c08720 0.56 -1.0
898,960 - PGA1_c08720 0.56 +0.0
898,968 - PGA1_c08720 0.57 +0.6
898,968 - PGA1_c08720 0.57 -0.2
898,970 + PGA1_c08720 0.57 +0.7
899,018 - PGA1_c08720 0.60 -0.5
899,018 - PGA1_c08720 0.60 +0.5
899,035 + PGA1_c08720 0.61 -0.7
899,035 + PGA1_c08720 0.61 +1.0
899,035 + PGA1_c08720 0.61 -1.2
899,035 + PGA1_c08720 0.61 -0.4
899,035 + PGA1_c08720 0.61 -0.3
899,040 + PGA1_c08720 0.61 -2.0
899,043 - PGA1_c08720 0.61 +1.2
899,043 - PGA1_c08720 0.61 +0.3
899,043 - PGA1_c08720 0.61 -0.1
899,043 - PGA1_c08720 0.61 +1.0
899,048 - PGA1_c08720 0.62 +0.4
899,067 + PGA1_c08720 0.63 -1.2
899,072 + PGA1_c08720 0.63 -0.0
899,073 - PGA1_c08720 0.63 +0.5
899,075 + PGA1_c08720 0.63 -0.6
899,075 + PGA1_c08720 0.63 +1.0
899,080 - PGA1_c08720 0.64 -1.0
899,083 - PGA1_c08720 0.64 -0.4
899,109 + PGA1_c08720 0.65 +0.7
899,158 + PGA1_c08720 0.68 -2.0
899,265 - PGA1_c08720 0.75 -0.1
899,274 + PGA1_c08720 0.75 +1.1
899,276 + PGA1_c08720 0.75 +0.7
899,277 - PGA1_c08720 0.75 +0.2
899,321 + PGA1_c08720 0.78 -0.0
899,399 + PGA1_c08720 0.82 +0.1
899,409 + PGA1_c08720 0.83 -1.1
899,417 - PGA1_c08720 0.84 +1.0
899,457 + PGA1_c08720 0.86 -0.0
899,457 + PGA1_c08720 0.86 -0.1
899,457 + PGA1_c08720 0.86 -2.7
899,465 - PGA1_c08720 0.86 -0.6
899,465 - PGA1_c08720 0.86 -0.5
899,471 + PGA1_c08720 0.87 +0.5
899,480 - PGA1_c08720 0.87 -1.4
899,484 - PGA1_c08720 0.88 +0.2
899,502 - PGA1_c08720 0.89 -0.6
899,504 + PGA1_c08720 0.89 +0.7
899,514 + PGA1_c08720 0.89 +0.5
899,522 - PGA1_c08720 0.90 +0.4
899,548 + -0.6
899,555 + +0.5
899,580 - +1.6
899,580 - -0.6
899,585 + +0.1
899,626 + -0.1
899,644 + +0.3
899,647 - +0.4
899,649 + +0.5
899,649 + -0.4
899,657 - -2.0
899,657 - +1.0
899,689 + +0.6
899,711 + +1.4
899,717 + -1.8
899,719 + -2.2
899,719 + +2.0
899,719 + -0.9
899,719 + -0.1
899,719 + -1.7
899,719 + +0.3
899,719 + +0.6
899,719 + -0.6
899,719 + +1.0
899,724 + -0.1
899,725 - -0.8
899,727 - +0.3
899,727 - -1.9
899,727 - -0.0
899,727 - +1.3
899,727 - +0.2
899,727 - -0.9
899,727 - -0.1
899,732 - +0.6
899,755 + +0.8
899,756 + +1.0
899,756 + -1.4
899,764 - +1.1
899,764 - +2.7
899,764 - -0.2
899,795 - PGA1_c08730 0.16 +0.5
899,840 - PGA1_c08730 0.42 +0.9
899,840 - PGA1_c08730 0.42 +1.0
899,852 + PGA1_c08730 0.49 -0.0
899,853 + PGA1_c08730 0.50 +0.4
899,857 + PGA1_c08730 0.52 -0.6
899,860 - PGA1_c08730 0.54 +0.4
899,862 - PGA1_c08730 0.55 +1.6
899,890 + PGA1_c08730 0.71 +0.0
899,906 + PGA1_c08730 0.81 +0.2
899,923 + -2.6
900,003 - +0.7
900,012 + +1.8
900,049 - -0.5

Or see this region's nucleotide sequence