Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06710 and PGA1_c06720 are separated by 322 nucleotides PGA1_c06720 and PGA1_c06730 are separated by 406 nucleotides
PGA1_c06710: PGA1_c06710 - cytochrome c oxidase subunit 1-beta, at 688,056 to 689,729
_c06710
PGA1_c06720: PGA1_c06720 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 690,052 to 690,477
_c06720
PGA1_c06730: PGA1_c06730 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 690,884 to 692,806
_c06730
Position (kb) 690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 689.262 kb on - strand, within PGA1_c06710 at 689.873 kb on + strand at 689.892 kb on + strand at 689.900 kb on - strand at 690.033 kb on + strand at 690.041 kb on - strand at 690.041 kb on - strand at 690.110 kb on - strand, within PGA1_c06720 at 690.118 kb on + strand, within PGA1_c06720 at 690.118 kb on + strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.133 kb on - strand, within PGA1_c06720 at 690.136 kb on + strand, within PGA1_c06720 at 690.138 kb on - strand, within PGA1_c06720 at 690.144 kb on - strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.226 kb on + strand, within PGA1_c06720 at 690.252 kb on - strand, within PGA1_c06720 at 690.264 kb on - strand, within PGA1_c06720 at 690.272 kb on + strand, within PGA1_c06720 at 690.300 kb on + strand, within PGA1_c06720 at 690.327 kb on + strand, within PGA1_c06720 at 690.327 kb on + strand, within PGA1_c06720 at 690.335 kb on - strand, within PGA1_c06720 at 690.335 kb on - strand, within PGA1_c06720 at 690.464 kb on - strand at 690.476 kb on + strand at 690.493 kb on + strand at 690.493 kb on + strand at 690.602 kb on - strand at 690.655 kb on + strand at 690.663 kb on - strand at 690.756 kb on + strand at 690.769 kb on - strand at 690.788 kb on + strand at 690.806 kb on - strand at 690.826 kb on - strand at 690.869 kb on - strand at 690.876 kb on + strand at 690.886 kb on + strand at 690.894 kb on - strand at 690.901 kb on + strand at 690.909 kb on - strand at 690.933 kb on + strand at 690.993 kb on - strand at 691.063 kb on - strand at 691.093 kb on + strand, within PGA1_c06730 at 691.111 kb on - strand, within PGA1_c06730 at 691.138 kb on - strand, within PGA1_c06730 at 691.164 kb on - strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.183 kb on - strand, within PGA1_c06730 at 691.300 kb on + strand, within PGA1_c06730 at 691.331 kb on + strand, within PGA1_c06730 at 691.390 kb on + strand, within PGA1_c06730 at 691.390 kb on + strand, within PGA1_c06730 at 691.398 kb on - strand, within PGA1_c06730 at 691.398 kb on - strand, within PGA1_c06730 at 691.455 kb on - strand, within PGA1_c06730 at 691.462 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 689,262 - PGA1_c06710 0.72 -1.3 689,873 + -1.0 689,892 + +0.5 689,900 - -0.0 690,033 + +1.1 690,041 - -1.3 690,041 - +1.0 690,110 - PGA1_c06720 0.14 -1.0 690,118 + PGA1_c06720 0.15 +2.6 690,118 + PGA1_c06720 0.15 -0.6 690,126 - PGA1_c06720 0.17 -1.3 690,126 - PGA1_c06720 0.17 +0.4 690,126 - PGA1_c06720 0.17 -0.6 690,126 - PGA1_c06720 0.17 +0.6 690,133 - PGA1_c06720 0.19 +0.7 690,136 + PGA1_c06720 0.20 +1.0 690,138 - PGA1_c06720 0.20 -1.0 690,144 - PGA1_c06720 0.22 -2.5 690,173 + PGA1_c06720 0.28 -0.6 690,173 + PGA1_c06720 0.28 -1.3 690,173 + PGA1_c06720 0.28 -1.2 690,226 + PGA1_c06720 0.41 +0.1 690,252 - PGA1_c06720 0.47 -1.0 690,264 - PGA1_c06720 0.50 -1.5 690,272 + PGA1_c06720 0.52 -0.0 690,300 + PGA1_c06720 0.58 +0.7 690,327 + PGA1_c06720 0.65 -0.7 690,327 + PGA1_c06720 0.65 -0.7 690,335 - PGA1_c06720 0.66 +0.2 690,335 - PGA1_c06720 0.66 -1.0 690,464 - +1.0 690,476 + +0.1 690,493 + -0.5 690,493 + -0.6 690,602 - +0.3 690,655 + -0.5 690,663 - +1.0 690,756 + +1.6 690,769 - +0.2 690,788 + +0.7 690,806 - -1.6 690,826 - +1.4 690,869 - +0.7 690,876 + +1.6 690,886 + +0.4 690,894 - +1.0 690,901 + +1.0 690,909 - -0.6 690,933 + -1.5 690,993 - -0.3 691,063 - -0.0 691,093 + PGA1_c06730 0.11 +1.0 691,111 - PGA1_c06730 0.12 -1.0 691,138 - PGA1_c06730 0.13 -1.0 691,164 - PGA1_c06730 0.15 +0.1 691,175 + PGA1_c06730 0.15 -0.8 691,175 + PGA1_c06730 0.15 -0.0 691,175 + PGA1_c06730 0.15 -0.0 691,175 + PGA1_c06730 0.15 -1.2 691,183 - PGA1_c06730 0.16 -1.3 691,300 + PGA1_c06730 0.22 +0.8 691,331 + PGA1_c06730 0.23 +1.0 691,390 + PGA1_c06730 0.26 +0.7 691,390 + PGA1_c06730 0.26 +0.7 691,398 - PGA1_c06730 0.27 -0.2 691,398 - PGA1_c06730 0.27 -1.6 691,455 - PGA1_c06730 0.30 -0.3 691,462 + PGA1_c06730 0.30 +1.0 691,472 + PGA1_c06730 0.31 +1.0 691,472 + PGA1_c06730 0.31 +0.1 691,472 + PGA1_c06730 0.31 -1.6 691,472 + PGA1_c06730 0.31 +0.2
Or see this region's nucleotide sequence