Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05690

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05680 and PGA1_c05690 are separated by 106 nucleotidesPGA1_c05690 and PGA1_c05700 are separated by 135 nucleotides PGA1_c05680: PGA1_c05680 - Predicted membrane protein, at 580,280 to 581,335 _c05680 PGA1_c05690: PGA1_c05690 - Truncated hemoglobins, at 581,442 to 581,852 _c05690 PGA1_c05700: PGA1_c05700 - KAP family P-loop domain., at 581,988 to 583,832 _c05700 Position (kb) 581 582Strain fitness (log2 ratio) -2 -1 0 1 2 3at 580.494 kb on - strand, within PGA1_c05680at 580.574 kb on + strand, within PGA1_c05680at 580.800 kb on + strand, within PGA1_c05680at 580.815 kb on + strand, within PGA1_c05680at 580.823 kb on - strand, within PGA1_c05680at 580.976 kb on + strand, within PGA1_c05680at 581.053 kb on + strand, within PGA1_c05680at 581.066 kb on - strand, within PGA1_c05680at 581.089 kb on - strand, within PGA1_c05680at 581.131 kb on + strand, within PGA1_c05680at 581.149 kb on - strand, within PGA1_c05680at 581.151 kb on + strand, within PGA1_c05680at 581.156 kb on + strand, within PGA1_c05680at 581.169 kb on - strand, within PGA1_c05680at 581.189 kb on + strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.267 kb on - strandat 581.267 kb on - strandat 581.276 kb on + strandat 581.276 kb on + strandat 581.276 kb on + strandat 581.283 kb on + strandat 581.284 kb on - strandat 581.284 kb on - strandat 581.366 kb on + strandat 581.440 kb on + strandat 581.448 kb on - strandat 581.502 kb on + strand, within PGA1_c05690at 581.502 kb on - strand, within PGA1_c05690at 581.530 kb on + strand, within PGA1_c05690at 581.538 kb on - strand, within PGA1_c05690at 581.538 kb on - strand, within PGA1_c05690at 581.538 kb on - strand, within PGA1_c05690at 581.641 kb on - strand, within PGA1_c05690at 581.719 kb on + strand, within PGA1_c05690at 581.719 kb on + strand, within PGA1_c05690at 581.749 kb on + strand, within PGA1_c05690at 581.749 kb on + strand, within PGA1_c05690at 581.770 kb on - strand, within PGA1_c05690at 581.782 kb on - strand, within PGA1_c05690at 581.810 kb on + strand, within PGA1_c05690at 581.818 kb on - strandat 581.823 kb on - strandat 581.823 kb on - strandat 581.841 kb on + strandat 581.841 kb on + strandat 581.841 kb on + strandat 581.841 kb on + strandat 581.848 kb on - strandat 581.849 kb on - strandat 581.849 kb on - strandat 581.864 kb on - strandat 581.883 kb on - strandat 581.888 kb on - strandat 581.923 kb on - strandat 581.923 kb on - strandat 581.923 kb on - strandat 581.923 kb on - strandat 581.931 kb on - strandat 581.954 kb on + strandat 581.954 kb on + strandat 581.954 kb on + strandat 581.954 kb on + strandat 581.959 kb on + strandat 581.962 kb on - strandat 581.966 kb on + strandat 581.966 kb on + strandat 581.966 kb on + strandat 581.966 kb on + strandat 581.966 kb on + strandat 581.968 kb on + strandat 581.972 kb on + strandat 581.974 kb on - strandat 581.974 kb on - strandat 581.981 kb on - strandat 582.006 kb on - strandat 582.006 kb on - strandat 582.008 kb on + strandat 582.016 kb on - strandat 582.077 kb on + strandat 582.082 kb on + strandat 582.082 kb on + strandat 582.085 kb on - strandat 582.085 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.090 kb on - strandat 582.095 kb on + strandat 582.100 kb on - strandat 582.159 kb on + strandat 582.167 kb on - strandat 582.171 kb on - strandat 582.171 kb on - strandat 582.173 kb on + strand, within PGA1_c05700at 582.192 kb on + strand, within PGA1_c05700at 582.217 kb on + strand, within PGA1_c05700at 582.247 kb on - strand, within PGA1_c05700at 582.273 kb on + strand, within PGA1_c05700at 582.288 kb on + strand, within PGA1_c05700at 582.332 kb on - strand, within PGA1_c05700at 582.332 kb on - strand, within PGA1_c05700at 582.335 kb on + strand, within PGA1_c05700at 582.335 kb on + strand, within PGA1_c05700at 582.337 kb on - strand, within PGA1_c05700at 582.338 kb on + strand, within PGA1_c05700at 582.343 kb on - strand, within PGA1_c05700at 582.346 kb on - strand, within PGA1_c05700at 582.346 kb on - strand, within PGA1_c05700at 582.357 kb on + strand, within PGA1_c05700at 582.376 kb on - strand, within PGA1_c05700at 582.400 kb on + strand, within PGA1_c05700at 582.422 kb on + strand, within PGA1_c05700at 582.435 kb on + strand, within PGA1_c05700at 582.468 kb on - strand, within PGA1_c05700at 582.545 kb on + strand, within PGA1_c05700at 582.548 kb on - strand, within PGA1_c05700at 582.548 kb on - strand, within PGA1_c05700at 582.553 kb on - strand, within PGA1_c05700at 582.556 kb on - strand, within PGA1_c05700at 582.575 kb on + strand, within PGA1_c05700at 582.580 kb on + strand, within PGA1_c05700at 582.583 kb on - strand, within PGA1_c05700at 582.583 kb on - strand, within PGA1_c05700at 582.587 kb on + strand, within PGA1_c05700at 582.588 kb on + strand, within PGA1_c05700at 582.609 kb on + strand, within PGA1_c05700at 582.609 kb on + strand, within PGA1_c05700at 582.609 kb on + strand, within PGA1_c05700at 582.609 kb on + strand, within PGA1_c05700at 582.610 kb on - strand, within PGA1_c05700at 582.615 kb on + strand, within PGA1_c05700at 582.617 kb on - strand, within PGA1_c05700at 582.617 kb on - strand, within PGA1_c05700at 582.617 kb on - strand, within PGA1_c05700at 582.623 kb on - strand, within PGA1_c05700at 582.636 kb on + strand, within PGA1_c05700at 582.636 kb on + strand, within PGA1_c05700at 582.636 kb on + strand, within PGA1_c05700at 582.636 kb on + strand, within PGA1_c05700at 582.636 kb on + strand, within PGA1_c05700at 582.667 kb on + strand, within PGA1_c05700at 582.683 kb on + strand, within PGA1_c05700at 582.690 kb on - strand, within PGA1_c05700at 582.703 kb on + strand, within PGA1_c05700at 582.710 kb on + strand, within PGA1_c05700at 582.715 kb on - strand, within PGA1_c05700at 582.734 kb on + strand, within PGA1_c05700at 582.756 kb on + strand, within PGA1_c05700at 582.756 kb on + strand, within PGA1_c05700at 582.763 kb on + strand, within PGA1_c05700at 582.763 kb on + strand, within PGA1_c05700at 582.763 kb on + strand, within PGA1_c05700at 582.763 kb on + strand, within PGA1_c05700at 582.764 kb on - strand, within PGA1_c05700at 582.764 kb on - strand, within PGA1_c05700at 582.795 kb on - strand, within PGA1_c05700at 582.800 kb on + strand, within PGA1_c05700at 582.800 kb on + strand, within PGA1_c05700at 582.801 kb on + strand, within PGA1_c05700at 582.801 kb on + strand, within PGA1_c05700at 582.806 kb on - strand, within PGA1_c05700at 582.838 kb on + strand, within PGA1_c05700at 582.838 kb on + strand, within PGA1_c05700at 582.846 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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580,494 - PGA1_c05680 0.20 +1.0
580,574 + PGA1_c05680 0.28 +0.0
580,800 + PGA1_c05680 0.49 +0.0
580,815 + PGA1_c05680 0.51 -0.5
580,823 - PGA1_c05680 0.51 -1.3
580,976 + PGA1_c05680 0.66 -1.8
581,053 + PGA1_c05680 0.73 +0.8
581,066 - PGA1_c05680 0.74 -0.5
581,089 - PGA1_c05680 0.77 -0.5
581,131 + PGA1_c05680 0.81 +0.6
581,149 - PGA1_c05680 0.82 +3.6
581,151 + PGA1_c05680 0.82 +2.0
581,156 + PGA1_c05680 0.83 -0.5
581,169 - PGA1_c05680 0.84 +1.0
581,189 + PGA1_c05680 0.86 +1.0
581,197 - PGA1_c05680 0.87 -0.5
581,197 - PGA1_c05680 0.87 -0.8
581,197 - PGA1_c05680 0.87 +2.0
581,197 - PGA1_c05680 0.87 +0.5
581,197 - PGA1_c05680 0.87 +0.6
581,267 - -0.5
581,267 - -1.3
581,276 + -0.1
581,276 + +0.9
581,276 + +1.0
581,283 + +1.9
581,284 - +1.0
581,284 - +1.0
581,366 + -0.7
581,440 + +0.8
581,448 - +2.0
581,502 + PGA1_c05690 0.15 +0.4
581,502 - PGA1_c05690 0.15 +2.0
581,530 + PGA1_c05690 0.21 +0.0
581,538 - PGA1_c05690 0.23 +1.6
581,538 - PGA1_c05690 0.23 +1.0
581,538 - PGA1_c05690 0.23 -0.5
581,641 - PGA1_c05690 0.48 +0.0
581,719 + PGA1_c05690 0.67 +0.3
581,719 + PGA1_c05690 0.67 -1.3
581,749 + PGA1_c05690 0.75 +1.5
581,749 + PGA1_c05690 0.75 -0.7
581,770 - PGA1_c05690 0.80 -0.5
581,782 - PGA1_c05690 0.83 -0.5
581,810 + PGA1_c05690 0.90 +0.8
581,818 - +1.0
581,823 - -0.3
581,823 - +0.3
581,841 + +0.9
581,841 + -0.5
581,841 + -1.0
581,841 + -0.1
581,848 - +1.0
581,849 - -1.1
581,849 - -0.3
581,864 - +1.0
581,883 - +1.5
581,888 - -0.5
581,923 - +1.0
581,923 - -0.4
581,923 - +1.0
581,923 - -0.3
581,931 - +0.2
581,954 + -0.2
581,954 + +0.0
581,954 + +1.6
581,954 + -0.1
581,959 + +0.6
581,962 - -2.4
581,966 + +1.0
581,966 + +0.0
581,966 + +1.5
581,966 + +0.0
581,966 + +0.0
581,968 + -1.0
581,972 + -0.7
581,974 - +1.0
581,974 - +0.0
581,981 - -0.3
582,006 - -1.0
582,006 - +1.0
582,008 + +0.2
582,016 - -0.5
582,077 + +1.5
582,082 + +0.0
582,082 + -0.5
582,085 - +2.0
582,085 - +1.8
582,090 - +0.0
582,090 - -1.5
582,090 - +1.2
582,090 - +1.0
582,090 - +2.6
582,090 - +0.5
582,090 - +0.5
582,090 - +0.2
582,090 - +1.6
582,095 + -1.0
582,100 - -1.0
582,159 + +2.0
582,167 - -1.5
582,171 - +1.6
582,171 - -0.5
582,173 + PGA1_c05700 0.10 +0.5
582,192 + PGA1_c05700 0.11 +0.5
582,217 + PGA1_c05700 0.12 -1.0
582,247 - PGA1_c05700 0.14 -0.5
582,273 + PGA1_c05700 0.15 -0.3
582,288 + PGA1_c05700 0.16 -0.2
582,332 - PGA1_c05700 0.19 +0.4
582,332 - PGA1_c05700 0.19 +0.3
582,335 + PGA1_c05700 0.19 +0.0
582,335 + PGA1_c05700 0.19 +0.6
582,337 - PGA1_c05700 0.19 -2.0
582,338 + PGA1_c05700 0.19 +0.7
582,343 - PGA1_c05700 0.19 +1.5
582,346 - PGA1_c05700 0.19 +2.0
582,346 - PGA1_c05700 0.19 +0.0
582,357 + PGA1_c05700 0.20 -0.7
582,376 - PGA1_c05700 0.21 +0.4
582,400 + PGA1_c05700 0.22 +0.2
582,422 + PGA1_c05700 0.24 -2.3
582,435 + PGA1_c05700 0.24 +0.3
582,468 - PGA1_c05700 0.26 -0.4
582,545 + PGA1_c05700 0.30 +1.0
582,548 - PGA1_c05700 0.30 -1.5
582,548 - PGA1_c05700 0.30 -0.7
582,553 - PGA1_c05700 0.31 +0.0
582,556 - PGA1_c05700 0.31 +2.9
582,575 + PGA1_c05700 0.32 +2.4
582,580 + PGA1_c05700 0.32 +1.0
582,583 - PGA1_c05700 0.32 -1.0
582,583 - PGA1_c05700 0.32 -0.5
582,587 + PGA1_c05700 0.32 -0.5
582,588 + PGA1_c05700 0.33 +1.0
582,609 + PGA1_c05700 0.34 +0.4
582,609 + PGA1_c05700 0.34 +0.4
582,609 + PGA1_c05700 0.34 +0.3
582,609 + PGA1_c05700 0.34 +1.0
582,610 - PGA1_c05700 0.34 -1.8
582,615 + PGA1_c05700 0.34 -1.0
582,617 - PGA1_c05700 0.34 -0.4
582,617 - PGA1_c05700 0.34 -0.5
582,617 - PGA1_c05700 0.34 +1.8
582,623 - PGA1_c05700 0.34 +1.5
582,636 + PGA1_c05700 0.35 +0.6
582,636 + PGA1_c05700 0.35 +2.6
582,636 + PGA1_c05700 0.35 +0.5
582,636 + PGA1_c05700 0.35 -0.6
582,636 + PGA1_c05700 0.35 +0.3
582,667 + PGA1_c05700 0.37 +2.0
582,683 + PGA1_c05700 0.38 +0.0
582,690 - PGA1_c05700 0.38 +0.0
582,703 + PGA1_c05700 0.39 +0.0
582,710 + PGA1_c05700 0.39 +0.0
582,715 - PGA1_c05700 0.39 +0.5
582,734 + PGA1_c05700 0.40 +1.0
582,756 + PGA1_c05700 0.42 -1.8
582,756 + PGA1_c05700 0.42 +1.0
582,763 + PGA1_c05700 0.42 -0.5
582,763 + PGA1_c05700 0.42 +0.9
582,763 + PGA1_c05700 0.42 -1.0
582,763 + PGA1_c05700 0.42 +2.0
582,764 - PGA1_c05700 0.42 -0.3
582,764 - PGA1_c05700 0.42 -0.3
582,795 - PGA1_c05700 0.44 +1.6
582,800 + PGA1_c05700 0.44 +3.4
582,800 + PGA1_c05700 0.44 +0.6
582,801 + PGA1_c05700 0.44 +1.0
582,801 + PGA1_c05700 0.44 -0.3
582,806 - PGA1_c05700 0.44 -1.4
582,838 + PGA1_c05700 0.46 -2.5
582,838 + PGA1_c05700 0.46 +1.8
582,846 + +1.0

Or see this region's nucleotide sequence