Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04740 and PGA1_c04750 are separated by 123 nucleotides PGA1_c04750 and PGA1_c04760 are separated by 5 nucleotides PGA1_c04760 and PGA1_c04770 overlap by 4 nucleotides
PGA1_c04740: PGA1_c04740 - phoH-like protein, at 465,628 to 466,635
_c04740
PGA1_c04750: PGA1_c04750 - metalloprotein, YbeY/UPF0054 family, at 466,759 to 467,289
_c04750
PGA1_c04760: PGA1_c04760 - magnesium and cobalt efflux protein corC-like protein, at 467,295 to 468,194
_c04760
PGA1_c04770: PGA1_c04770 - apolipoprotein N-acyltransferase Int, at 468,191 to 469,702
_c04770
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2 at 465.853 kb on + strand, within PGA1_c04740 at 465.872 kb on - strand, within PGA1_c04740 at 465.881 kb on + strand, within PGA1_c04740 at 465.889 kb on - strand, within PGA1_c04740 at 465.928 kb on - strand, within PGA1_c04740 at 465.941 kb on - strand, within PGA1_c04740 at 465.960 kb on + strand, within PGA1_c04740 at 465.984 kb on - strand, within PGA1_c04740 at 466.008 kb on + strand, within PGA1_c04740 at 466.080 kb on + strand, within PGA1_c04740 at 466.094 kb on + strand, within PGA1_c04740 at 466.151 kb on + strand, within PGA1_c04740 at 466.174 kb on + strand, within PGA1_c04740 at 466.253 kb on - strand, within PGA1_c04740 at 466.311 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.371 kb on + strand, within PGA1_c04740 at 466.436 kb on - strand, within PGA1_c04740 at 466.457 kb on - strand, within PGA1_c04740 at 466.469 kb on + strand, within PGA1_c04740 at 466.493 kb on + strand, within PGA1_c04740 at 466.501 kb on - strand, within PGA1_c04740 at 466.521 kb on + strand, within PGA1_c04740 at 466.578 kb on + strand at 466.665 kb on + strand at 466.673 kb on - strand at 466.721 kb on - strand at 467.244 kb on + strand at 467.260 kb on - strand at 467.350 kb on - strand at 467.368 kb on - strand at 468.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 465,853 + PGA1_c04740 0.22 -0.0 465,872 - PGA1_c04740 0.24 -0.8 465,881 + PGA1_c04740 0.25 +0.5 465,889 - PGA1_c04740 0.26 +0.6 465,928 - PGA1_c04740 0.30 -0.9 465,941 - PGA1_c04740 0.31 -0.9 465,960 + PGA1_c04740 0.33 -0.6 465,984 - PGA1_c04740 0.35 -0.2 466,008 + PGA1_c04740 0.38 -0.3 466,080 + PGA1_c04740 0.45 -0.1 466,094 + PGA1_c04740 0.46 +2.4 466,151 + PGA1_c04740 0.52 -1.4 466,174 + PGA1_c04740 0.54 -0.7 466,253 - PGA1_c04740 0.62 -1.1 466,311 + PGA1_c04740 0.68 -0.1 466,343 + PGA1_c04740 0.71 +0.1 466,343 + PGA1_c04740 0.71 -0.4 466,353 + PGA1_c04740 0.72 -0.9 466,353 + PGA1_c04740 0.72 +0.1 466,353 + PGA1_c04740 0.72 -0.1 466,353 + PGA1_c04740 0.72 -2.4 466,361 - PGA1_c04740 0.73 +0.5 466,361 - PGA1_c04740 0.73 -1.0 466,361 - PGA1_c04740 0.73 +0.8 466,361 - PGA1_c04740 0.73 -0.3 466,371 + PGA1_c04740 0.74 -0.3 466,436 - PGA1_c04740 0.80 +0.8 466,457 - PGA1_c04740 0.82 -0.4 466,469 + PGA1_c04740 0.83 -0.2 466,493 + PGA1_c04740 0.86 +0.4 466,501 - PGA1_c04740 0.87 -0.5 466,521 + PGA1_c04740 0.89 -0.3 466,578 + +0.1 466,665 + +1.5 466,673 - +1.1 466,721 - -0.6 467,244 + -0.4 467,260 - -2.3 467,350 - +0.3 467,368 - -1.0 468,192 - +0.3
Or see this region's nucleotide sequence