Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04710 and PGA1_c04720 are separated by 205 nucleotides PGA1_c04720 and PGA1_c04730 are separated by 11 nucleotides PGA1_c04730 and PGA1_c04740 are separated by 153 nucleotides
PGA1_c04710: PGA1_c04710 - (dimethylallyl)adenosine tRNA methylthiotransferase MiaB, at 463,081 to 464,403
_c04710
PGA1_c04720: PGA1_c04720 - outer membrane protein OmpA-domain containing protein, at 464,609 to 465,160
_c04720
PGA1_c04730: PGA1_c04730 - hypothetical protein, at 465,172 to 465,474
_c04730
PGA1_c04740: PGA1_c04740 - phoH-like protein, at 465,628 to 466,635
_c04740
Position (kb) 464
465
466 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 463.639 kb on + strand, within PGA1_c04710 at 463.639 kb on + strand, within PGA1_c04710 at 463.655 kb on + strand, within PGA1_c04710 at 463.655 kb on + strand, within PGA1_c04710 at 463.733 kb on + strand, within PGA1_c04710 at 463.780 kb on - strand, within PGA1_c04710 at 463.837 kb on + strand, within PGA1_c04710 at 463.872 kb on - strand, within PGA1_c04710 at 463.874 kb on + strand, within PGA1_c04710 at 463.884 kb on + strand, within PGA1_c04710 at 463.892 kb on - strand, within PGA1_c04710 at 463.916 kb on + strand, within PGA1_c04710 at 463.917 kb on - strand, within PGA1_c04710 at 464.045 kb on + strand, within PGA1_c04710 at 464.052 kb on - strand, within PGA1_c04710 at 464.053 kb on - strand, within PGA1_c04710 at 464.053 kb on - strand, within PGA1_c04710 at 464.107 kb on - strand, within PGA1_c04710 at 464.206 kb on + strand, within PGA1_c04710 at 464.214 kb on - strand, within PGA1_c04710 at 464.214 kb on - strand, within PGA1_c04710 at 464.216 kb on + strand, within PGA1_c04710 at 464.224 kb on - strand, within PGA1_c04710 at 464.286 kb on - strand at 464.294 kb on + strand at 464.355 kb on + strand at 464.530 kb on - strand at 464.530 kb on - strand at 464.530 kb on - strand at 464.533 kb on + strand at 464.533 kb on + strand at 464.541 kb on - strand at 464.541 kb on - strand at 464.541 kb on - strand at 464.556 kb on + strand at 464.577 kb on + strand at 464.577 kb on + strand at 464.579 kb on - strand at 464.584 kb on - strand at 464.599 kb on + strand at 464.607 kb on - strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.666 kb on - strand, within PGA1_c04720 at 464.666 kb on - strand, within PGA1_c04720 at 464.688 kb on + strand, within PGA1_c04720 at 464.696 kb on - strand, within PGA1_c04720 at 464.717 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.757 kb on - strand, within PGA1_c04720 at 464.778 kb on + strand, within PGA1_c04720 at 464.833 kb on + strand, within PGA1_c04720 at 464.841 kb on + strand, within PGA1_c04720 at 464.868 kb on - strand, within PGA1_c04720 at 464.897 kb on + strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.976 kb on + strand, within PGA1_c04720 at 464.984 kb on - strand, within PGA1_c04720 at 465.025 kb on + strand, within PGA1_c04720 at 465.057 kb on + strand, within PGA1_c04720 at 465.065 kb on - strand, within PGA1_c04720 at 465.070 kb on + strand, within PGA1_c04720 at 465.078 kb on - strand, within PGA1_c04720 at 465.130 kb on - strand at 465.154 kb on + strand at 465.162 kb on - strand at 465.162 kb on - strand at 465.164 kb on + strand at 465.195 kb on + strand at 465.201 kb on - strand at 465.267 kb on + strand, within PGA1_c04730 at 465.282 kb on - strand, within PGA1_c04730 at 465.287 kb on - strand, within PGA1_c04730 at 465.350 kb on + strand, within PGA1_c04730 at 465.401 kb on + strand, within PGA1_c04730 at 465.455 kb on + strand at 465.473 kb on + strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.483 kb on + strand at 465.491 kb on - strand at 465.517 kb on + strand at 465.574 kb on - strand at 465.574 kb on - strand at 465.676 kb on - strand at 465.853 kb on + strand, within PGA1_c04740 at 465.872 kb on - strand, within PGA1_c04740 at 465.881 kb on + strand, within PGA1_c04740 at 465.889 kb on - strand, within PGA1_c04740 at 465.928 kb on - strand, within PGA1_c04740 at 465.941 kb on - strand, within PGA1_c04740 at 465.960 kb on + strand, within PGA1_c04740 at 465.984 kb on - strand, within PGA1_c04740 at 466.008 kb on + strand, within PGA1_c04740 at 466.080 kb on + strand, within PGA1_c04740 at 466.094 kb on + strand, within PGA1_c04740 at 466.151 kb on + strand, within PGA1_c04740
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 463,639 + PGA1_c04710 0.42 +1.1 463,639 + PGA1_c04710 0.42 -0.1 463,655 + PGA1_c04710 0.43 +0.7 463,655 + PGA1_c04710 0.43 -0.8 463,733 + PGA1_c04710 0.49 -0.4 463,780 - PGA1_c04710 0.53 -1.7 463,837 + PGA1_c04710 0.57 -1.2 463,872 - PGA1_c04710 0.60 -3.5 463,874 + PGA1_c04710 0.60 -0.2 463,884 + PGA1_c04710 0.61 +0.6 463,892 - PGA1_c04710 0.61 -0.2 463,916 + PGA1_c04710 0.63 -0.7 463,917 - PGA1_c04710 0.63 -2.5 464,045 + PGA1_c04710 0.73 +0.3 464,052 - PGA1_c04710 0.73 -0.2 464,053 - PGA1_c04710 0.73 -1.0 464,053 - PGA1_c04710 0.73 -0.3 464,107 - PGA1_c04710 0.78 -2.0 464,206 + PGA1_c04710 0.85 +1.4 464,214 - PGA1_c04710 0.86 +0.1 464,214 - PGA1_c04710 0.86 -1.1 464,216 + PGA1_c04710 0.86 +0.4 464,224 - PGA1_c04710 0.86 +0.9 464,286 - -0.2 464,294 + -0.4 464,355 + +0.4 464,530 - -0.4 464,530 - +0.9 464,530 - -0.4 464,533 + +0.0 464,533 + -1.5 464,541 - -0.4 464,541 - +0.2 464,541 - +0.4 464,556 + -1.7 464,577 + +0.6 464,577 + -0.8 464,579 - +1.8 464,584 - +1.6 464,599 + +0.2 464,607 - +1.1 464,630 + -0.3 464,630 + -1.0 464,630 + +0.9 464,630 + +0.6 464,638 - -2.2 464,638 - +0.6 464,638 - -1.5 464,666 - PGA1_c04720 0.10 +0.6 464,666 - PGA1_c04720 0.10 -0.7 464,688 + PGA1_c04720 0.14 -0.9 464,696 - PGA1_c04720 0.16 +0.7 464,717 - PGA1_c04720 0.20 +0.3 464,730 - PGA1_c04720 0.22 -0.7 464,730 - PGA1_c04720 0.22 -1.6 464,757 - PGA1_c04720 0.27 -0.6 464,778 + PGA1_c04720 0.31 +1.1 464,833 + PGA1_c04720 0.41 +0.1 464,841 + PGA1_c04720 0.42 -0.1 464,868 - PGA1_c04720 0.47 -0.4 464,897 + PGA1_c04720 0.52 -0.4 464,905 - PGA1_c04720 0.54 +0.9 464,905 - PGA1_c04720 0.54 +1.9 464,905 - PGA1_c04720 0.54 +0.7 464,905 - PGA1_c04720 0.54 -0.5 464,905 - PGA1_c04720 0.54 -0.5 464,976 + PGA1_c04720 0.66 +1.8 464,984 - PGA1_c04720 0.68 +0.1 465,025 + PGA1_c04720 0.75 +0.1 465,057 + PGA1_c04720 0.81 -0.3 465,065 - PGA1_c04720 0.83 -0.3 465,070 + PGA1_c04720 0.84 +0.2 465,078 - PGA1_c04720 0.85 -1.7 465,130 - +0.5 465,154 + +0.3 465,162 - -0.9 465,162 - -1.5 465,164 + +0.3 465,195 + -0.3 465,201 - +0.7 465,267 + PGA1_c04730 0.31 +0.4 465,282 - PGA1_c04730 0.36 -0.5 465,287 - PGA1_c04730 0.38 -0.2 465,350 + PGA1_c04730 0.59 +1.6 465,401 + PGA1_c04730 0.76 +0.9 465,455 + -1.8 465,473 + -0.0 465,481 - -0.9 465,481 - +0.3 465,481 - -0.2 465,481 - -0.1 465,483 + -1.7 465,491 - -0.5 465,517 + +0.6 465,574 - -1.0 465,574 - -0.4 465,676 - -1.2 465,853 + PGA1_c04740 0.22 -0.0 465,872 - PGA1_c04740 0.24 -0.8 465,881 + PGA1_c04740 0.25 +0.5 465,889 - PGA1_c04740 0.26 +0.6 465,928 - PGA1_c04740 0.30 -0.9 465,941 - PGA1_c04740 0.31 -0.9 465,960 + PGA1_c04740 0.33 -0.6 465,984 - PGA1_c04740 0.35 -0.2 466,008 + PGA1_c04740 0.38 -0.3 466,080 + PGA1_c04740 0.45 -0.1 466,094 + PGA1_c04740 0.46 +2.4 466,151 + PGA1_c04740 0.52 -1.4
Or see this region's nucleotide sequence