Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03880 and PGA1_c03890 are separated by 94 nucleotides PGA1_c03890 and PGA1_c03900 are separated by 108 nucleotides
PGA1_c03880: PGA1_c03880 - putative transcriptional activator protein RaiR, at 374,695 to 375,414
_c03880
PGA1_c03890: PGA1_c03890 - putative acyl-homoserine-lactone synthase RaiI, at 375,509 to 376,150
_c03890
PGA1_c03900: PGA1_c03900 - hypothetical protein, at 376,259 to 377,797
_c03900
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.514 kb on + strand at 374.531 kb on + strand at 374.531 kb on + strand at 374.539 kb on - strand at 374.539 kb on - strand at 374.539 kb on - strand at 374.585 kb on - strand at 374.595 kb on - strand at 374.595 kb on - strand at 374.609 kb on + strand at 374.617 kb on - strand at 374.643 kb on + strand at 374.664 kb on + strand at 374.691 kb on + strand at 374.719 kb on - strand at 374.731 kb on - strand at 374.746 kb on + strand at 374.747 kb on + strand at 374.752 kb on + strand at 374.759 kb on + strand at 374.759 kb on + strand at 374.759 kb on + strand at 374.789 kb on - strand, within PGA1_c03880 at 374.825 kb on - strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.868 kb on + strand, within PGA1_c03880 at 374.870 kb on + strand, within PGA1_c03880 at 374.870 kb on + strand, within PGA1_c03880 at 374.870 kb on + strand, within PGA1_c03880 at 374.873 kb on + strand, within PGA1_c03880 at 374.873 kb on + strand, within PGA1_c03880 at 374.873 kb on + strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.876 kb on - strand, within PGA1_c03880 at 374.878 kb on - strand, within PGA1_c03880 at 374.881 kb on - strand, within PGA1_c03880 at 374.881 kb on - strand, within PGA1_c03880 at 374.881 kb on - strand, within PGA1_c03880 at 374.883 kb on - strand, within PGA1_c03880 at 374.896 kb on + strand, within PGA1_c03880 at 374.984 kb on - strand, within PGA1_c03880 at 374.984 kb on - strand, within PGA1_c03880 at 375.038 kb on + strand, within PGA1_c03880 at 375.041 kb on - strand, within PGA1_c03880 at 375.041 kb on - strand, within PGA1_c03880 at 375.046 kb on - strand, within PGA1_c03880 at 375.046 kb on - strand, within PGA1_c03880 at 375.071 kb on - strand, within PGA1_c03880 at 375.078 kb on + strand, within PGA1_c03880 at 375.078 kb on + strand, within PGA1_c03880 at 375.078 kb on + strand, within PGA1_c03880 at 375.078 kb on + strand, within PGA1_c03880 at 375.078 kb on + strand, within PGA1_c03880 at 375.085 kb on + strand, within PGA1_c03880 at 375.086 kb on - strand, within PGA1_c03880 at 375.086 kb on - strand, within PGA1_c03880 at 375.086 kb on - strand, within PGA1_c03880 at 375.086 kb on - strand, within PGA1_c03880 at 375.086 kb on - strand, within PGA1_c03880 at 375.086 kb on - strand, within PGA1_c03880 at 375.088 kb on + strand, within PGA1_c03880 at 375.096 kb on - strand, within PGA1_c03880 at 375.137 kb on + strand, within PGA1_c03880 at 375.137 kb on + strand, within PGA1_c03880 at 375.137 kb on + strand, within PGA1_c03880 at 375.137 kb on + strand, within PGA1_c03880 at 375.137 kb on + strand, within PGA1_c03880 at 375.145 kb on - strand, within PGA1_c03880 at 375.178 kb on + strand, within PGA1_c03880 at 375.178 kb on + strand, within PGA1_c03880 at 375.178 kb on + strand, within PGA1_c03880 at 375.186 kb on - strand, within PGA1_c03880 at 375.186 kb on - strand, within PGA1_c03880 at 375.199 kb on - strand, within PGA1_c03880 at 375.203 kb on + strand, within PGA1_c03880 at 375.235 kb on - strand, within PGA1_c03880 at 375.257 kb on - strand, within PGA1_c03880 at 375.265 kb on + strand, within PGA1_c03880 at 375.265 kb on + strand, within PGA1_c03880 at 375.265 kb on + strand, within PGA1_c03880 at 375.265 kb on + strand, within PGA1_c03880 at 375.265 kb on + strand, within PGA1_c03880 at 375.273 kb on - strand, within PGA1_c03880 at 375.273 kb on - strand, within PGA1_c03880 at 375.273 kb on - strand, within PGA1_c03880 at 375.273 kb on - strand, within PGA1_c03880 at 375.273 kb on - strand, within PGA1_c03880 at 375.273 kb on - strand, within PGA1_c03880 at 375.327 kb on + strand, within PGA1_c03880 at 375.342 kb on + strand, within PGA1_c03880 at 375.355 kb on + strand at 375.362 kb on + strand at 375.365 kb on + strand at 375.365 kb on + strand at 375.365 kb on - strand at 375.367 kb on + strand at 375.370 kb on - strand at 375.370 kb on - strand at 375.373 kb on - strand at 375.375 kb on - strand at 375.375 kb on - strand at 375.375 kb on - strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.392 kb on + strand at 375.400 kb on - strand at 375.400 kb on - strand at 375.400 kb on - strand at 375.402 kb on + strand at 375.442 kb on + strand at 375.449 kb on - strand at 375.498 kb on - strand at 375.499 kb on + strand at 375.499 kb on + strand at 375.512 kb on - strand at 375.534 kb on + strand at 375.534 kb on + strand at 375.534 kb on + strand at 375.542 kb on - strand at 375.542 kb on - strand at 375.542 kb on - strand at 375.542 kb on - strand at 375.542 kb on - strand at 375.547 kb on - strand at 375.587 kb on - strand, within PGA1_c03890 at 375.587 kb on - strand, within PGA1_c03890 at 375.587 kb on - strand, within PGA1_c03890 at 375.589 kb on + strand, within PGA1_c03890 at 375.606 kb on + strand, within PGA1_c03890 at 375.647 kb on - strand, within PGA1_c03890 at 375.648 kb on + strand, within PGA1_c03890 at 375.665 kb on - strand, within PGA1_c03890 at 375.737 kb on - strand, within PGA1_c03890 at 375.737 kb on - strand, within PGA1_c03890 at 375.767 kb on - strand, within PGA1_c03890 at 375.769 kb on + strand, within PGA1_c03890 at 375.777 kb on - strand, within PGA1_c03890 at 375.777 kb on - strand, within PGA1_c03890 at 375.828 kb on + strand, within PGA1_c03890 at 375.844 kb on - strand, within PGA1_c03890 at 375.862 kb on + strand, within PGA1_c03890 at 375.865 kb on - strand, within PGA1_c03890 at 375.865 kb on - strand, within PGA1_c03890 at 375.872 kb on + strand, within PGA1_c03890 at 375.874 kb on + strand, within PGA1_c03890 at 375.922 kb on - strand, within PGA1_c03890 at 375.957 kb on + strand, within PGA1_c03890 at 375.957 kb on + strand, within PGA1_c03890 at 375.993 kb on + strand, within PGA1_c03890 at 376.002 kb on + strand, within PGA1_c03890 at 376.026 kb on + strand, within PGA1_c03890 at 376.045 kb on - strand, within PGA1_c03890 at 376.057 kb on + strand, within PGA1_c03890 at 376.078 kb on + strand, within PGA1_c03890 at 376.086 kb on - strand at 376.123 kb on + strand at 376.123 kb on + strand at 376.174 kb on - strand at 376.180 kb on + strand at 376.183 kb on - strand at 376.188 kb on - strand at 376.188 kb on - strand at 376.188 kb on - strand at 376.368 kb on - strand at 376.441 kb on + strand, within PGA1_c03900 at 376.444 kb on + strand, within PGA1_c03900 at 376.452 kb on - strand, within PGA1_c03900 at 376.526 kb on - strand, within PGA1_c03900 at 376.532 kb on - strand, within PGA1_c03900 at 376.606 kb on + strand, within PGA1_c03900 at 376.618 kb on + strand, within PGA1_c03900 at 376.654 kb on + strand, within PGA1_c03900 at 376.654 kb on - strand, within PGA1_c03900 at 376.703 kb on + strand, within PGA1_c03900 at 376.703 kb on + strand, within PGA1_c03900 at 376.711 kb on - strand, within PGA1_c03900 at 376.711 kb on - strand, within PGA1_c03900 at 376.711 kb on - strand, within PGA1_c03900 at 376.711 kb on - strand, within PGA1_c03900 at 376.730 kb on - strand, within PGA1_c03900 at 377.040 kb on + strand, within PGA1_c03900 at 377.122 kb on + strand, within PGA1_c03900 at 377.123 kb on + strand, within PGA1_c03900
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 374,514 + +0.1 374,531 + +0.1 374,531 + -2.0 374,539 - -2.6 374,539 - +0.1 374,539 - -1.2 374,585 - -0.7 374,595 - +0.0 374,595 - -1.2 374,609 + -1.6 374,617 - +0.1 374,643 + -0.9 374,664 + +1.2 374,691 + -0.3 374,719 - +0.4 374,731 - +0.2 374,746 + -0.3 374,747 + -0.4 374,752 + +0.6 374,759 + +0.1 374,759 + +2.0 374,759 + -0.8 374,789 - PGA1_c03880 0.13 -2.4 374,825 - PGA1_c03880 0.18 +0.6 374,868 + PGA1_c03880 0.24 +0.9 374,868 + PGA1_c03880 0.24 +0.1 374,868 + PGA1_c03880 0.24 +0.8 374,868 + PGA1_c03880 0.24 -0.3 374,868 + PGA1_c03880 0.24 -0.0 374,868 + PGA1_c03880 0.24 +0.8 374,868 + PGA1_c03880 0.24 -0.3 374,868 + PGA1_c03880 0.24 +1.6 374,868 + PGA1_c03880 0.24 +0.2 374,868 + PGA1_c03880 0.24 +0.1 374,868 + PGA1_c03880 0.24 -1.9 374,868 + PGA1_c03880 0.24 +0.4 374,868 + PGA1_c03880 0.24 -0.0 374,868 + PGA1_c03880 0.24 -0.0 374,868 + PGA1_c03880 0.24 +0.3 374,868 + PGA1_c03880 0.24 +1.3 374,868 + PGA1_c03880 0.24 +0.4 374,868 + PGA1_c03880 0.24 +0.7 374,868 + PGA1_c03880 0.24 +0.4 374,868 + PGA1_c03880 0.24 +0.6 374,868 + PGA1_c03880 0.24 +1.6 374,868 + PGA1_c03880 0.24 +0.4 374,868 + PGA1_c03880 0.24 -1.5 374,868 + PGA1_c03880 0.24 +0.2 374,868 + PGA1_c03880 0.24 +0.1 374,870 + PGA1_c03880 0.24 +1.5 374,870 + PGA1_c03880 0.24 -0.6 374,870 + PGA1_c03880 0.24 +0.6 374,873 + PGA1_c03880 0.25 +0.7 374,873 + PGA1_c03880 0.25 -0.9 374,873 + PGA1_c03880 0.25 +1.3 374,876 - PGA1_c03880 0.25 +1.2 374,876 - PGA1_c03880 0.25 +0.0 374,876 - PGA1_c03880 0.25 +0.8 374,876 - PGA1_c03880 0.25 +1.8 374,876 - PGA1_c03880 0.25 -1.2 374,876 - PGA1_c03880 0.25 -0.4 374,876 - PGA1_c03880 0.25 +0.4 374,876 - PGA1_c03880 0.25 -0.3 374,876 - PGA1_c03880 0.25 +1.1 374,876 - PGA1_c03880 0.25 +0.9 374,876 - PGA1_c03880 0.25 +0.3 374,876 - PGA1_c03880 0.25 +0.9 374,876 - PGA1_c03880 0.25 +0.5 374,878 - PGA1_c03880 0.25 -1.8 374,881 - PGA1_c03880 0.26 -1.8 374,881 - PGA1_c03880 0.26 +0.6 374,881 - PGA1_c03880 0.26 +0.7 374,883 - PGA1_c03880 0.26 -1.2 374,896 + PGA1_c03880 0.28 +0.5 374,984 - PGA1_c03880 0.40 +0.3 374,984 - PGA1_c03880 0.40 +0.1 375,038 + PGA1_c03880 0.48 +0.8 375,041 - PGA1_c03880 0.48 +0.5 375,041 - PGA1_c03880 0.48 +0.2 375,046 - PGA1_c03880 0.49 +0.2 375,046 - PGA1_c03880 0.49 +0.7 375,071 - PGA1_c03880 0.52 +1.4 375,078 + PGA1_c03880 0.53 +1.7 375,078 + PGA1_c03880 0.53 -0.5 375,078 + PGA1_c03880 0.53 -1.9 375,078 + PGA1_c03880 0.53 +0.1 375,078 + PGA1_c03880 0.53 +1.7 375,085 + PGA1_c03880 0.54 +1.8 375,086 - PGA1_c03880 0.54 +0.5 375,086 - PGA1_c03880 0.54 +0.7 375,086 - PGA1_c03880 0.54 -0.2 375,086 - PGA1_c03880 0.54 +0.3 375,086 - PGA1_c03880 0.54 +0.1 375,086 - PGA1_c03880 0.54 +0.6 375,088 + PGA1_c03880 0.55 +0.8 375,096 - PGA1_c03880 0.56 -0.8 375,137 + PGA1_c03880 0.61 +0.6 375,137 + PGA1_c03880 0.61 +0.6 375,137 + PGA1_c03880 0.61 -0.6 375,137 + PGA1_c03880 0.61 +0.8 375,137 + PGA1_c03880 0.61 +0.7 375,145 - PGA1_c03880 0.62 +0.6 375,178 + PGA1_c03880 0.67 +0.5 375,178 + PGA1_c03880 0.67 +1.0 375,178 + PGA1_c03880 0.67 -0.2 375,186 - PGA1_c03880 0.68 +0.7 375,186 - PGA1_c03880 0.68 +0.4 375,199 - PGA1_c03880 0.70 +0.5 375,203 + PGA1_c03880 0.71 +0.7 375,235 - PGA1_c03880 0.75 +0.1 375,257 - PGA1_c03880 0.78 +0.8 375,265 + PGA1_c03880 0.79 -0.1 375,265 + PGA1_c03880 0.79 +0.1 375,265 + PGA1_c03880 0.79 -0.8 375,265 + PGA1_c03880 0.79 +2.2 375,265 + PGA1_c03880 0.79 +0.1 375,273 - PGA1_c03880 0.80 +0.5 375,273 - PGA1_c03880 0.80 +1.2 375,273 - PGA1_c03880 0.80 +0.0 375,273 - PGA1_c03880 0.80 +1.5 375,273 - PGA1_c03880 0.80 +1.2 375,273 - PGA1_c03880 0.80 +0.6 375,327 + PGA1_c03880 0.88 +1.5 375,342 + PGA1_c03880 0.90 +0.5 375,355 + +0.8 375,362 + +0.9 375,365 + +0.3 375,365 + +0.0 375,365 - +0.4 375,367 + +1.9 375,370 - +0.3 375,370 - +1.0 375,373 - +1.3 375,375 - -1.9 375,375 - +1.1 375,375 - +1.6 375,392 + +0.8 375,392 + -2.4 375,392 + +0.0 375,392 + -0.4 375,392 + +0.6 375,392 + +1.2 375,392 + +1.1 375,392 + -2.6 375,392 + +0.9 375,392 + +0.7 375,400 - -1.2 375,400 - +0.4 375,400 - +0.9 375,402 + +1.1 375,442 + -0.8 375,449 - +1.4 375,498 - +0.2 375,499 + +0.2 375,499 + -0.1 375,512 - -1.0 375,534 + -1.2 375,534 + +0.8 375,534 + -0.0 375,542 - -2.1 375,542 - -0.1 375,542 - +0.5 375,542 - -1.9 375,542 - +0.0 375,547 - -1.3 375,587 - PGA1_c03890 0.12 -0.0 375,587 - PGA1_c03890 0.12 +0.5 375,587 - PGA1_c03890 0.12 +0.5 375,589 + PGA1_c03890 0.12 -1.6 375,606 + PGA1_c03890 0.15 -0.1 375,647 - PGA1_c03890 0.21 -0.6 375,648 + PGA1_c03890 0.22 -2.7 375,665 - PGA1_c03890 0.24 +1.1 375,737 - PGA1_c03890 0.36 -0.9 375,737 - PGA1_c03890 0.36 +0.1 375,767 - PGA1_c03890 0.40 +2.1 375,769 + PGA1_c03890 0.40 -0.8 375,777 - PGA1_c03890 0.42 -2.3 375,777 - PGA1_c03890 0.42 -0.4 375,828 + PGA1_c03890 0.50 +0.2 375,844 - PGA1_c03890 0.52 +0.9 375,862 + PGA1_c03890 0.55 +0.6 375,865 - PGA1_c03890 0.55 -0.1 375,865 - PGA1_c03890 0.55 -1.3 375,872 + PGA1_c03890 0.57 +0.7 375,874 + PGA1_c03890 0.57 +0.6 375,922 - PGA1_c03890 0.64 -0.4 375,957 + PGA1_c03890 0.70 +0.2 375,957 + PGA1_c03890 0.70 +0.2 375,993 + PGA1_c03890 0.75 -0.5 376,002 + PGA1_c03890 0.77 -1.0 376,026 + PGA1_c03890 0.81 -0.2 376,045 - PGA1_c03890 0.83 -0.5 376,057 + PGA1_c03890 0.85 -0.7 376,078 + PGA1_c03890 0.89 -1.0 376,086 - -0.1 376,123 + -1.0 376,123 + +1.8 376,174 - +0.3 376,180 + +0.3 376,183 - -1.1 376,188 - -1.0 376,188 - -0.9 376,188 - -0.8 376,368 - -0.9 376,441 + PGA1_c03900 0.12 -1.4 376,444 + PGA1_c03900 0.12 -1.7 376,452 - PGA1_c03900 0.13 -0.3 376,526 - PGA1_c03900 0.17 -0.9 376,532 - PGA1_c03900 0.18 -0.4 376,606 + PGA1_c03900 0.23 -0.7 376,618 + PGA1_c03900 0.23 -0.2 376,654 + PGA1_c03900 0.26 -0.8 376,654 - PGA1_c03900 0.26 -1.9 376,703 + PGA1_c03900 0.29 +0.0 376,703 + PGA1_c03900 0.29 -1.0 376,711 - PGA1_c03900 0.29 -1.7 376,711 - PGA1_c03900 0.29 -0.2 376,711 - PGA1_c03900 0.29 -2.4 376,711 - PGA1_c03900 0.29 -2.2 376,730 - PGA1_c03900 0.31 +1.8 377,040 + PGA1_c03900 0.51 +0.2 377,122 + PGA1_c03900 0.56 -0.3 377,123 + PGA1_c03900 0.56 -0.7
Or see this region's nucleotide sequence