Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35830

Experiment: m.b. Gentamicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Gentamicin 0.004 mg/ml
3,751,607	+				-1.7
3,751,630	+		PGA1_c35800	0.18	+0.1
3,751,638	-		PGA1_c35800	0.21	-1.5
3,751,651	+		PGA1_c35800	0.26	-1.6
3,751,696	+		PGA1_c35800	0.42	-1.8
3,751,696	-		PGA1_c35800	0.42	-1.1
3,751,709	-		PGA1_c35800	0.47	-0.7
3,751,732	+		PGA1_c35800	0.55	-1.2
3,751,732	+		PGA1_c35800	0.55	-1.1
3,751,732	+		PGA1_c35800	0.55	-2.4
3,751,742	+		PGA1_c35800	0.59	-2.3
3,751,888	+		PGA1_c35810	0.10	-2.1
3,751,897	-		PGA1_c35810	0.13	-0.1
3,751,944	+		PGA1_c35810	0.29	-0.7
3,751,960	-		PGA1_c35810	0.34	-1.6
3,752,005	-		PGA1_c35810	0.49	-0.8
3,752,061	+		PGA1_c35810	0.68	-0.7
3,752,061	+		PGA1_c35810	0.68	-1.1
3,752,061	+		PGA1_c35810	0.68	-1.3
3,752,095	-		PGA1_c35810	0.80	-1.0
3,752,095	-		PGA1_c35810	0.80	-2.0
3,752,121	+		PGA1_c35810	0.89	-2.7
3,752,131	+				-1.7
3,752,134	+				+0.1
3,752,254	+		PGA1_c35820	0.14	-1.7
3,752,254	-		PGA1_c35820	0.14	-2.3
3,752,277	+		PGA1_c35820	0.20	-1.7
3,752,285	-		PGA1_c35820	0.22	-1.4
3,752,360	+		PGA1_c35820	0.41	-0.2
3,752,395	-		PGA1_c35820	0.50	-1.0
3,752,395	-		PGA1_c35820	0.50	-0.1
3,752,395	-		PGA1_c35820	0.50	-3.0
3,752,397	+		PGA1_c35820	0.50	+0.3
3,752,413	-		PGA1_c35820	0.54	-1.2
3,752,416	+		PGA1_c35820	0.55	-2.3
3,752,418	-		PGA1_c35820	0.56	-1.4
3,752,455	+		PGA1_c35820	0.65	-1.5
3,752,456	+		PGA1_c35820	0.65	+0.1
3,752,470	+		PGA1_c35820	0.69	-1.3
3,752,472	-		PGA1_c35820	0.69	-0.4
3,752,483	+		PGA1_c35820	0.72	-1.0
3,752,483	+		PGA1_c35820	0.72	-0.7
3,752,483	+		PGA1_c35820	0.72	-1.7
3,752,483	+		PGA1_c35820	0.72	-1.8
3,752,483	+		PGA1_c35820	0.72	-1.1
3,752,486	-		PGA1_c35820	0.73	+0.3
3,752,491	-		PGA1_c35820	0.74	-2.6
3,752,491	-		PGA1_c35820	0.74	-1.8
3,752,543	-		PGA1_c35820	0.88	-3.4
3,752,543	-		PGA1_c35820	0.88	-1.6
3,752,602	+				-0.4
3,752,602	+				-0.7
3,752,602	+				-2.2
3,752,610	-				+0.0
3,752,610	-				-1.2
3,752,610	-				-1.4
3,752,617	+				-1.6
3,752,620	-				-0.3
3,752,620	-				-1.7
3,752,625	+				-0.4
3,752,633	-				-0.2
3,752,684	+		PGA1_c35830	0.21	-1.4
3,752,684	+		PGA1_c35830	0.21	-0.5
3,752,692	-		PGA1_c35830	0.23	+0.3
3,752,692	-		PGA1_c35830	0.23	-1.0
3,752,722	+		PGA1_c35830	0.30	-2.7
3,752,764	+		PGA1_c35830	0.41	-0.9
3,752,769	+		PGA1_c35830	0.42	-1.2
3,752,769	+		PGA1_c35830	0.42	-1.1
3,752,769	+		PGA1_c35830	0.42	-2.5
3,752,769	+		PGA1_c35830	0.42	-1.1
3,752,772	-		PGA1_c35830	0.43	-1.7
3,752,772	-		PGA1_c35830	0.43	-1.2
3,752,772	-		PGA1_c35830	0.43	-0.1
3,752,777	-		PGA1_c35830	0.44	-0.9
3,752,777	-		PGA1_c35830	0.44	-1.0
3,752,843	+		PGA1_c35830	0.61	-2.4
3,752,863	+		PGA1_c35830	0.66	-1.9
3,752,863	+		PGA1_c35830	0.66	-0.2
3,752,863	+		PGA1_c35830	0.66	-2.4
3,752,863	+		PGA1_c35830	0.66	-0.8
3,752,871	-		PGA1_c35830	0.68	-1.5
3,752,871	-		PGA1_c35830	0.68	-1.4
3,752,871	-		PGA1_c35830	0.68	-0.7
3,752,905	+		PGA1_c35830	0.77	-0.4
3,752,907	-		PGA1_c35830	0.78	-1.9
3,752,920	+		PGA1_c35830	0.81	+0.1
3,752,931	+		PGA1_c35830	0.84	-2.5
3,752,931	+		PGA1_c35830	0.84	-2.7
3,752,951	+		PGA1_c35830	0.89	+0.1
3,752,999	-				-1.6
3,753,025	+				-1.5
3,753,063	+				-0.7
3,753,063	+				-0.1
3,753,063	+				+0.8
3,753,071	-				-2.1
3,753,071	-				-1.0
3,753,073	+				-1.4
3,753,073	+				-1.2
3,753,073	+				-0.9
3,753,073	-				-1.2
3,753,073	-				-2.4
3,753,073	-				-3.4
3,753,075	+				-1.0
3,753,081	-				-2.1
3,753,081	-				-1.1
3,753,139	+				-3.3
3,753,196	+				-2.6
3,753,330	-		PGA1_c35840	0.19	-0.2
3,753,369	+		PGA1_c35840	0.22	-0.6
3,753,369	+		PGA1_c35840	0.22	-2.1
3,753,420	-		PGA1_c35840	0.25	-3.0
3,753,420	-		PGA1_c35840	0.25	-0.1
3,753,479	-		PGA1_c35840	0.30	-1.7
3,753,518	+		PGA1_c35840	0.33	-1.6
3,753,518	+		PGA1_c35840	0.33	-2.9
3,753,518	+		PGA1_c35840	0.33	-1.8
3,753,581	+		PGA1_c35840	0.38	+1.0
3,753,581	+		PGA1_c35840	0.38	-1.9
3,753,581	+		PGA1_c35840	0.38	-1.2
3,753,581	+		PGA1_c35840	0.38	-1.2
3,753,581	+		PGA1_c35840	0.38	-0.8
3,753,589	-		PGA1_c35840	0.38	-2.1
3,753,589	-		PGA1_c35840	0.38	-2.5
3,753,596	+		PGA1_c35840	0.39	-0.8
3,753,596	+		PGA1_c35840	0.39	-2.9
3,753,604	-		PGA1_c35840	0.39	-0.8
3,753,604	-		PGA1_c35840	0.39	-0.7
3,753,614	+		PGA1_c35840	0.40	-1.0
3,753,614	-		PGA1_c35840	0.40	+0.0
3,753,657	+		PGA1_c35840	0.43	-0.2
3,753,665	-		PGA1_c35840	0.44	-2.4
3,753,696	+		PGA1_c35840	0.46	-2.1
3,753,717	+		PGA1_c35840	0.48	-1.4
3,753,753	-		PGA1_c35840	0.50	-2.1
3,753,779	+		PGA1_c35840	0.52	-1.1
3,753,904	+		PGA1_c35840	0.62	-0.6
3,753,913	-		PGA1_c35840	0.63	-1.7
3,753,940	+		PGA1_c35840	0.65	-0.1
3,753,940	+		PGA1_c35840	0.65	+0.5
3,753,940	+		PGA1_c35840	0.65	-2.0
3,753,948	-		PGA1_c35840	0.65	-2.4
3,753,948	-		PGA1_c35840	0.65	-2.4
3,753,974	-		PGA1_c35840	0.67	-0.2
3,753,978	-		PGA1_c35840	0.67	-1.8
3,753,978	-		PGA1_c35840	0.67	-1.4