Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03270 and PGA1_c03280 are separated by 11 nucleotides PGA1_c03280 and PGA1_c03290 are separated by 108 nucleotides
PGA1_c03270: PGA1_c03270 - molybdopterin molybdenumtransferase MoeA, at 312,391 to 313,647
_c03270
PGA1_c03280: PGA1_c03280 - hypothetical protein, at 313,659 to 314,672
_c03280
PGA1_c03290: PGA1_c03290 - transcription elongation factor GreA, at 314,781 to 315,251
_c03290
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1 at 312.692 kb on + strand, within PGA1_c03270 at 312.747 kb on + strand, within PGA1_c03270 at 312.755 kb on - strand, within PGA1_c03270 at 312.874 kb on + strand, within PGA1_c03270 at 312.887 kb on - strand, within PGA1_c03270 at 312.893 kb on - strand, within PGA1_c03270 at 312.971 kb on + strand, within PGA1_c03270 at 313.011 kb on + strand, within PGA1_c03270 at 313.069 kb on - strand, within PGA1_c03270 at 313.069 kb on - strand, within PGA1_c03270 at 313.137 kb on + strand, within PGA1_c03270 at 313.137 kb on - strand, within PGA1_c03270 at 313.150 kb on - strand, within PGA1_c03270 at 313.150 kb on - strand, within PGA1_c03270 at 313.202 kb on + strand, within PGA1_c03270 at 313.350 kb on + strand, within PGA1_c03270 at 313.402 kb on + strand, within PGA1_c03270 at 313.534 kb on - strand at 313.534 kb on - strand at 313.534 kb on - strand at 313.560 kb on + strand at 313.610 kb on - strand at 313.641 kb on + strand at 313.669 kb on - strand at 313.699 kb on - strand at 313.699 kb on - strand at 313.699 kb on - strand at 313.699 kb on - strand at 313.802 kb on - strand, within PGA1_c03280 at 313.847 kb on + strand, within PGA1_c03280 at 313.855 kb on - strand, within PGA1_c03280 at 314.042 kb on - strand, within PGA1_c03280 at 314.042 kb on - strand, within PGA1_c03280 at 314.044 kb on + strand, within PGA1_c03280 at 314.109 kb on - strand, within PGA1_c03280 at 314.121 kb on + strand, within PGA1_c03280 at 314.215 kb on + strand, within PGA1_c03280 at 314.299 kb on - strand, within PGA1_c03280 at 314.342 kb on - strand, within PGA1_c03280 at 314.380 kb on + strand, within PGA1_c03280 at 314.419 kb on - strand, within PGA1_c03280 at 314.426 kb on + strand, within PGA1_c03280 at 314.434 kb on - strand, within PGA1_c03280 at 314.451 kb on - strand, within PGA1_c03280 at 314.504 kb on + strand, within PGA1_c03280 at 314.613 kb on + strand at 314.667 kb on + strand at 314.676 kb on - strand at 314.705 kb on + strand at 314.709 kb on - strand at 314.713 kb on - strand at 314.713 kb on - strand at 314.750 kb on + strand at 314.785 kb on + strand at 314.835 kb on + strand, within PGA1_c03290 at 314.858 kb on - strand, within PGA1_c03290 at 314.870 kb on + strand, within PGA1_c03290 at 314.877 kb on + strand, within PGA1_c03290 at 314.885 kb on - strand, within PGA1_c03290 at 314.895 kb on - strand, within PGA1_c03290 at 315.135 kb on - strand, within PGA1_c03290 at 315.157 kb on + strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.216 kb on + strand at 315.232 kb on - strand at 315.329 kb on + strand at 315.359 kb on - strand at 315.372 kb on - strand at 315.374 kb on + strand at 315.473 kb on - strand at 315.513 kb on - strand at 315.519 kb on + strand at 315.533 kb on - strand at 315.542 kb on + strand at 315.542 kb on + strand at 315.550 kb on - strand at 315.550 kb on - strand at 315.553 kb on + strand at 315.561 kb on - strand at 315.569 kb on - strand at 315.649 kb on - strand at 315.655 kb on + strand at 315.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 312,692 + PGA1_c03270 0.24 +0.2 312,747 + PGA1_c03270 0.28 -0.2 312,755 - PGA1_c03270 0.29 -0.3 312,874 + PGA1_c03270 0.38 -0.2 312,887 - PGA1_c03270 0.39 +0.7 312,893 - PGA1_c03270 0.40 -0.3 312,971 + PGA1_c03270 0.46 -1.1 313,011 + PGA1_c03270 0.49 +0.1 313,069 - PGA1_c03270 0.54 -0.0 313,069 - PGA1_c03270 0.54 +1.1 313,137 + PGA1_c03270 0.59 +0.0 313,137 - PGA1_c03270 0.59 -1.5 313,150 - PGA1_c03270 0.60 -1.9 313,150 - PGA1_c03270 0.60 -0.6 313,202 + PGA1_c03270 0.65 +0.1 313,350 + PGA1_c03270 0.76 -0.8 313,402 + PGA1_c03270 0.80 -1.0 313,534 - -0.5 313,534 - -0.8 313,534 - -1.0 313,560 + +1.3 313,610 - +0.1 313,641 + -0.6 313,669 - -0.6 313,699 - -2.2 313,699 - -0.3 313,699 - -2.1 313,699 - +1.1 313,802 - PGA1_c03280 0.14 -0.0 313,847 + PGA1_c03280 0.19 +1.1 313,855 - PGA1_c03280 0.19 -0.8 314,042 - PGA1_c03280 0.38 +0.2 314,042 - PGA1_c03280 0.38 -0.9 314,044 + PGA1_c03280 0.38 +0.1 314,109 - PGA1_c03280 0.44 -0.7 314,121 + PGA1_c03280 0.46 +1.4 314,215 + PGA1_c03280 0.55 -0.9 314,299 - PGA1_c03280 0.63 -2.2 314,342 - PGA1_c03280 0.67 -0.1 314,380 + PGA1_c03280 0.71 -0.1 314,419 - PGA1_c03280 0.75 -2.3 314,426 + PGA1_c03280 0.76 -0.7 314,434 - PGA1_c03280 0.76 -1.7 314,451 - PGA1_c03280 0.78 -0.9 314,504 + PGA1_c03280 0.83 -0.9 314,613 + -0.9 314,667 + -2.2 314,676 - -1.4 314,705 + -0.5 314,709 - +0.5 314,713 - -1.7 314,713 - +1.1 314,750 + +0.1 314,785 + -1.1 314,835 + PGA1_c03290 0.11 -0.5 314,858 - PGA1_c03290 0.16 +0.3 314,870 + PGA1_c03290 0.19 -1.2 314,877 + PGA1_c03290 0.20 -1.6 314,885 - PGA1_c03290 0.22 +1.0 314,895 - PGA1_c03290 0.24 -1.9 315,135 - PGA1_c03290 0.75 -2.2 315,157 + PGA1_c03290 0.80 +1.1 315,165 - PGA1_c03290 0.82 -1.1 315,165 - PGA1_c03290 0.82 -0.5 315,216 + -1.0 315,232 - -0.8 315,329 + +1.7 315,359 - -0.3 315,372 - -1.1 315,374 + -0.7 315,473 - -0.2 315,513 - +0.6 315,519 + -0.7 315,533 - -0.6 315,542 + +0.1 315,542 + -0.3 315,550 - -0.0 315,550 - -0.5 315,553 + -0.7 315,561 - -0.1 315,569 - +0.1 315,649 - +1.3 315,655 + -0.2 315,655 + -2.2
Or see this region's nucleotide sequence