Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02780 and PGA1_c02790 are separated by 3 nucleotides PGA1_c02790 and PGA1_c02800 are separated by 80 nucleotides PGA1_c02800 and PGA1_c02810 are separated by 43 nucleotides
PGA1_c02780: PGA1_c02780 - Membrane-bound metallopeptidase, at 267,155 to 268,339
_c02780
PGA1_c02790: PGA1_c02790 - putative carboxy-terminal-processing protease, at 268,343 to 269,686
_c02790
PGA1_c02800: PGA1_c02800 - putative transcriptional regulator, AraC family, at 269,767 to 270,639
_c02800
PGA1_c02810: PGA1_c02810 - P-hydroxybenzoate hydroxylase PobA, at 270,683 to 271,909
_c02810
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 267.354 kb on - strand, within PGA1_c02780 at 267.413 kb on + strand, within PGA1_c02780 at 267.413 kb on + strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.564 kb on - strand, within PGA1_c02780 at 267.564 kb on - strand, within PGA1_c02780 at 267.646 kb on + strand, within PGA1_c02780 at 267.689 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.708 kb on + strand, within PGA1_c02780 at 267.708 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.731 kb on - strand, within PGA1_c02780 at 267.731 kb on - strand, within PGA1_c02780 at 267.795 kb on + strand, within PGA1_c02780 at 267.795 kb on + strand, within PGA1_c02780 at 267.855 kb on - strand, within PGA1_c02780 at 267.929 kb on + strand, within PGA1_c02780 at 267.930 kb on + strand, within PGA1_c02780 at 267.934 kb on + strand, within PGA1_c02780 at 267.938 kb on - strand, within PGA1_c02780 at 268.019 kb on - strand, within PGA1_c02780 at 268.127 kb on + strand, within PGA1_c02780 at 268.135 kb on + strand, within PGA1_c02780 at 268.135 kb on + strand, within PGA1_c02780 at 268.156 kb on - strand, within PGA1_c02780 at 268.237 kb on + strand at 268.245 kb on - strand at 268.266 kb on + strand at 268.377 kb on - strand at 268.389 kb on - strand at 268.404 kb on + strand at 268.437 kb on + strand at 268.461 kb on + strand at 268.506 kb on + strand, within PGA1_c02790 at 268.532 kb on - strand, within PGA1_c02790 at 268.597 kb on + strand, within PGA1_c02790 at 268.634 kb on - strand, within PGA1_c02790 at 268.658 kb on - strand, within PGA1_c02790 at 268.769 kb on + strand, within PGA1_c02790 at 268.769 kb on + strand, within PGA1_c02790 at 268.781 kb on + strand, within PGA1_c02790 at 268.786 kb on + strand, within PGA1_c02790 at 268.789 kb on - strand, within PGA1_c02790 at 268.789 kb on - strand, within PGA1_c02790 at 268.820 kb on + strand, within PGA1_c02790 at 268.820 kb on + strand, within PGA1_c02790 at 268.831 kb on + strand, within PGA1_c02790 at 268.989 kb on - strand, within PGA1_c02790 at 269.021 kb on + strand, within PGA1_c02790 at 269.034 kb on - strand, within PGA1_c02790 at 269.078 kb on - strand, within PGA1_c02790 at 269.148 kb on + strand, within PGA1_c02790 at 269.156 kb on - strand, within PGA1_c02790 at 269.158 kb on + strand, within PGA1_c02790 at 269.218 kb on + strand, within PGA1_c02790 at 269.226 kb on - strand, within PGA1_c02790 at 269.377 kb on + strand, within PGA1_c02790 at 269.385 kb on - strand, within PGA1_c02790 at 269.387 kb on + strand, within PGA1_c02790 at 269.387 kb on - strand, within PGA1_c02790 at 269.395 kb on - strand, within PGA1_c02790 at 269.495 kb on + strand, within PGA1_c02790 at 269.536 kb on - strand, within PGA1_c02790 at 269.546 kb on - strand, within PGA1_c02790 at 269.632 kb on + strand at 269.692 kb on + strand at 269.693 kb on + strand at 269.698 kb on + strand at 269.698 kb on + strand at 269.701 kb on - strand at 269.753 kb on + strand at 269.770 kb on - strand at 269.851 kb on + strand at 270.009 kb on - strand, within PGA1_c02800 at 270.107 kb on - strand, within PGA1_c02800 at 270.115 kb on - strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.158 kb on - strand, within PGA1_c02800 at 270.189 kb on + strand, within PGA1_c02800 at 270.189 kb on + strand, within PGA1_c02800 at 270.197 kb on - strand, within PGA1_c02800 at 270.197 kb on - strand, within PGA1_c02800 at 270.260 kb on + strand, within PGA1_c02800 at 270.294 kb on - strand, within PGA1_c02800 at 270.294 kb on - strand, within PGA1_c02800 at 270.370 kb on - strand, within PGA1_c02800 at 270.463 kb on - strand, within PGA1_c02800 at 270.532 kb on + strand, within PGA1_c02800 at 270.606 kb on + strand at 270.606 kb on + strand at 270.617 kb on + strand at 270.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 267,354 - PGA1_c02780 0.17 -1.2 267,413 + PGA1_c02780 0.22 -0.3 267,413 + PGA1_c02780 0.22 -0.7 267,421 - PGA1_c02780 0.22 +0.8 267,421 - PGA1_c02780 0.22 +1.1 267,421 - PGA1_c02780 0.22 -0.7 267,564 - PGA1_c02780 0.35 -1.4 267,564 - PGA1_c02780 0.35 -0.6 267,646 + PGA1_c02780 0.41 -0.5 267,689 - PGA1_c02780 0.45 -1.6 267,706 - PGA1_c02780 0.46 -0.7 267,706 - PGA1_c02780 0.46 -0.9 267,706 - PGA1_c02780 0.46 -0.9 267,708 + PGA1_c02780 0.47 -0.7 267,708 + PGA1_c02780 0.47 +0.6 267,723 + PGA1_c02780 0.48 -0.4 267,723 + PGA1_c02780 0.48 -1.3 267,723 + PGA1_c02780 0.48 +0.1 267,723 + PGA1_c02780 0.48 +1.0 267,723 + PGA1_c02780 0.48 -0.1 267,731 - PGA1_c02780 0.49 -2.0 267,731 - PGA1_c02780 0.49 -0.0 267,795 + PGA1_c02780 0.54 +0.5 267,795 + PGA1_c02780 0.54 +0.3 267,855 - PGA1_c02780 0.59 -1.1 267,929 + PGA1_c02780 0.65 -1.7 267,930 + PGA1_c02780 0.65 +0.5 267,934 + PGA1_c02780 0.66 +0.1 267,938 - PGA1_c02780 0.66 +0.9 268,019 - PGA1_c02780 0.73 -0.9 268,127 + PGA1_c02780 0.82 +0.1 268,135 + PGA1_c02780 0.83 +1.4 268,135 + PGA1_c02780 0.83 -1.3 268,156 - PGA1_c02780 0.84 +1.1 268,237 + +1.0 268,245 - -1.0 268,266 + -0.9 268,377 - -1.3 268,389 - -0.0 268,404 + -0.0 268,437 + -0.5 268,461 + +0.1 268,506 + PGA1_c02790 0.12 -1.5 268,532 - PGA1_c02790 0.14 -1.0 268,597 + PGA1_c02790 0.19 -0.3 268,634 - PGA1_c02790 0.22 -1.6 268,658 - PGA1_c02790 0.23 -0.5 268,769 + PGA1_c02790 0.32 +0.1 268,769 + PGA1_c02790 0.32 -1.9 268,781 + PGA1_c02790 0.33 -0.0 268,786 + PGA1_c02790 0.33 -1.2 268,789 - PGA1_c02790 0.33 -0.4 268,789 - PGA1_c02790 0.33 -0.7 268,820 + PGA1_c02790 0.35 -0.9 268,820 + PGA1_c02790 0.35 +0.1 268,831 + PGA1_c02790 0.36 -1.3 268,989 - PGA1_c02790 0.48 -1.4 269,021 + PGA1_c02790 0.50 -1.1 269,034 - PGA1_c02790 0.51 -1.5 269,078 - PGA1_c02790 0.55 -1.9 269,148 + PGA1_c02790 0.60 -1.2 269,156 - PGA1_c02790 0.60 -0.5 269,158 + PGA1_c02790 0.61 -1.9 269,218 + PGA1_c02790 0.65 -1.3 269,226 - PGA1_c02790 0.66 -2.6 269,377 + PGA1_c02790 0.77 -0.5 269,385 - PGA1_c02790 0.78 -1.9 269,387 + PGA1_c02790 0.78 -2.7 269,387 - PGA1_c02790 0.78 -1.7 269,395 - PGA1_c02790 0.78 +0.3 269,495 + PGA1_c02790 0.86 -0.1 269,536 - PGA1_c02790 0.89 -1.9 269,546 - PGA1_c02790 0.90 -0.5 269,632 + +2.1 269,692 + +0.1 269,693 + +0.1 269,698 + +0.8 269,698 + +0.2 269,701 - -0.5 269,753 + +2.9 269,770 - +0.7 269,851 + +0.1 270,009 - PGA1_c02800 0.28 +0.8 270,107 - PGA1_c02800 0.39 -0.8 270,115 - PGA1_c02800 0.40 +0.2 270,140 + PGA1_c02800 0.43 +0.8 270,140 + PGA1_c02800 0.43 -1.5 270,140 + PGA1_c02800 0.43 -0.8 270,148 - PGA1_c02800 0.44 +0.5 270,148 - PGA1_c02800 0.44 +1.9 270,148 - PGA1_c02800 0.44 -0.1 270,158 - PGA1_c02800 0.45 +0.6 270,189 + PGA1_c02800 0.48 -0.5 270,189 + PGA1_c02800 0.48 -0.2 270,197 - PGA1_c02800 0.49 +1.0 270,197 - PGA1_c02800 0.49 -0.6 270,260 + PGA1_c02800 0.56 +0.3 270,294 - PGA1_c02800 0.60 -0.0 270,294 - PGA1_c02800 0.60 +1.1 270,370 - PGA1_c02800 0.69 +0.1 270,463 - PGA1_c02800 0.80 +1.4 270,532 + PGA1_c02800 0.88 +0.4 270,606 + -3.0 270,606 + -2.3 270,617 + -0.1 270,632 - -0.6
Or see this region's nucleotide sequence