Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00230

Experiment: m.b. Gentamicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Gentamicin 0.004 mg/ml
23,387	-		PGA1_c00220	0.25	+1.8
23,413	-		PGA1_c00220	0.28	+0.1
23,418	-		PGA1_c00220	0.29	+0.2
23,426	+		PGA1_c00220	0.30	-0.1
23,562	-		PGA1_c00220	0.45	-2.3
23,567	+		PGA1_c00220	0.46	+0.2
23,567	+		PGA1_c00220	0.46	+0.2
23,572	+		PGA1_c00220	0.46	+0.2
23,572	+		PGA1_c00220	0.46	-0.7
23,572	+		PGA1_c00220	0.46	+0.5
23,575	-		PGA1_c00220	0.47	+0.0
23,575	-		PGA1_c00220	0.47	+0.3
23,575	-		PGA1_c00220	0.47	-0.2
23,575	-		PGA1_c00220	0.47	-0.6
23,575	-		PGA1_c00220	0.47	+0.8
23,575	-		PGA1_c00220	0.47	+0.2
23,575	-		PGA1_c00220	0.47	+2.6
23,575	-		PGA1_c00220	0.47	-0.2
23,575	-		PGA1_c00220	0.47	+0.8
23,575	-		PGA1_c00220	0.47	-0.2
23,580	-		PGA1_c00220	0.47	-1.6
23,585	-		PGA1_c00220	0.48	+0.7
23,587	-		PGA1_c00220	0.48	-0.6
23,621	+		PGA1_c00220	0.52	-2.8
23,628	+		PGA1_c00220	0.53	+0.6
23,645	+		PGA1_c00220	0.54	-0.9
23,645	+		PGA1_c00220	0.54	-0.6
23,669	+		PGA1_c00220	0.57	+0.3
23,677	-		PGA1_c00220	0.58	-0.5
23,688	-		PGA1_c00220	0.59	+0.1
23,726	+		PGA1_c00220	0.64	-1.1
23,757	+		PGA1_c00220	0.67	-0.0
23,766	+		PGA1_c00220	0.68	+0.4
23,774	+		PGA1_c00220	0.69	-0.4
23,788	+		PGA1_c00220	0.70	-3.5
23,805	+		PGA1_c00220	0.72	-0.4
23,805	-		PGA1_c00220	0.72	-0.9
23,821	+		PGA1_c00220	0.74	+1.2
23,821	+		PGA1_c00220	0.74	-1.2
23,829	-		PGA1_c00220	0.75	-0.0
23,831	+		PGA1_c00220	0.75	+1.0
23,839	-		PGA1_c00220	0.76	+0.3
23,839	-		PGA1_c00220	0.76	+0.8
23,844	+		PGA1_c00220	0.77	+0.1
23,857	+		PGA1_c00220	0.78	-0.6
23,876	+		PGA1_c00220	0.80	+1.0
23,884	-		PGA1_c00220	0.81	-1.4
23,884	-		PGA1_c00220	0.81	+0.2
23,884	-		PGA1_c00220	0.81	-0.3
23,997	-				+0.8
23,997	-				-0.4
24,049	+				+0.1
24,049	+				-1.2
24,057	-				-2.2
24,057	-				-0.4
24,057	-				+0.5
24,057	-				+0.9
24,092	+				+0.9
24,092	+				+1.2
24,100	-				-0.1
24,100	-				-0.2
24,100	-				-0.0
24,171	+				-0.8
24,171	+				+0.4
24,171	+				+0.1
24,171	+				-0.4
24,171	+				-0.5
24,171	+				+2.2
24,171	+				-0.3
24,171	+				+1.9
24,171	+				+0.1
24,171	+				-1.0
24,171	+				-0.2
24,171	+				-1.2
24,179	-				-3.2
24,179	-				+0.1
24,179	-				-0.2
24,179	-				-1.0
24,179	-				+0.9
24,179	-				+0.9
24,179	-				+0.6
24,179	-				+0.3
24,179	-				+1.9
24,179	-				-0.3
24,179	-				+0.2
24,179	-				+0.4
24,179	-				-1.2
24,179	-				-1.8
24,179	-				+0.3
24,179	-				+0.1
24,179	-				+1.9
24,179	-				-0.5
24,179	-				+1.0
24,179	-				+1.2
24,179	-				+0.3
24,179	-				-0.0
24,179	-				-0.8
24,307	-				+1.7
24,313	-				-1.4
24,313	-				+0.1
24,352	+				-0.3
24,357	+				-0.6
24,357	+				-0.5
24,357	+				-1.5
24,357	+				-1.5
24,357	+				-2.4
24,360	-				+1.3
24,360	-				+0.6
24,365	-				-0.7
24,365	-				-0.2
24,365	-				+0.9
24,365	-				+0.1
24,365	-				-1.8
24,380	+				-2.0
24,399	+				+1.8
24,399	+				-0.9
24,399	+				+1.8
24,399	+				-0.2
24,432	+				-0.6
24,508	+		PGA1_c00230	0.14	-2.8
24,514	+		PGA1_c00230	0.14	-0.6
24,523	+		PGA1_c00230	0.15	-2.4
24,536	+		PGA1_c00230	0.16	-1.2
24,588	-		PGA1_c00230	0.21	-0.7
24,637	+		PGA1_c00230	0.25	-0.4
24,637	+		PGA1_c00230	0.25	-2.2
24,645	-		PGA1_c00230	0.26	+0.2
24,645	-		PGA1_c00230	0.26	+0.6
24,650	-		PGA1_c00230	0.26	+0.2
24,739	+		PGA1_c00230	0.34	-0.5
24,739	+		PGA1_c00230	0.34	-0.7
24,739	+		PGA1_c00230	0.34	-1.6
24,747	-		PGA1_c00230	0.35	-0.2
24,747	-		PGA1_c00230	0.35	-0.9
24,786	-		PGA1_c00230	0.38	+0.0
24,787	-		PGA1_c00230	0.38	-0.5
24,809	+		PGA1_c00230	0.40	-1.0
24,835	-		PGA1_c00230	0.42	-0.6
24,843	-		PGA1_c00230	0.43	-0.2
24,972	+		PGA1_c00230	0.54	-0.1
24,980	-		PGA1_c00230	0.55	+0.4
25,052	+		PGA1_c00230	0.61	-2.2
25,071	+		PGA1_c00230	0.63	-0.2
25,071	+		PGA1_c00230	0.63	-0.5
25,080	-		PGA1_c00230	0.64	+0.2
25,109	-		PGA1_c00230	0.66	+0.8
25,114	-		PGA1_c00230	0.66	+0.6
25,115	+		PGA1_c00230	0.67	-0.2
25,115	+		PGA1_c00230	0.67	-0.6
25,132	-		PGA1_c00230	0.68	-1.2
25,132	-		PGA1_c00230	0.68	+1.2
25,156	+		PGA1_c00230	0.70	+0.2
25,175	+		PGA1_c00230	0.72	-1.4
25,195	+		PGA1_c00230	0.74	-0.6
25,195	+		PGA1_c00230	0.74	+0.3
25,245	-		PGA1_c00230	0.78	-1.1
25,295	-		PGA1_c00230	0.82	-1.2
25,295	-		PGA1_c00230	0.82	-1.2
25,300	-		PGA1_c00230	0.83	+0.9
25,303	-		PGA1_c00230	0.83	-1.4
25,305	-		PGA1_c00230	0.83	+0.6
25,329	+		PGA1_c00230	0.85	-2.2
25,353	+		PGA1_c00230	0.87	+2.2
25,353	-		PGA1_c00230	0.87	+0.4
25,361	-		PGA1_c00230	0.88	-2.5
25,363	+		PGA1_c00230	0.88	-0.2
25,363	+		PGA1_c00230	0.88	+0.4
25,363	+		PGA1_c00230	0.88	+0.3
25,369	-		PGA1_c00230	0.89	-0.0
25,398	+				+0.7
25,398	+				+0.0
25,398	+				-2.0
25,398	+				+0.2
25,398	+				+0.8
25,398	+				-0.8
25,398	+				-1.0
25,398	+				-0.7
25,398	+				-0.4
25,398	+				+0.2
25,405	-				+0.2
25,405	-				-0.8
25,406	-				-0.4
25,406	-				+0.1
25,406	-				+1.5
25,406	-				-0.9
25,406	-				-1.4
25,406	-				+0.4
25,416	+				-0.1
25,424	-				-0.7
25,466	+				-0.0
25,495	-				-2.2
25,496	+				+1.0
25,496	+				+0.8
25,496	+				-0.9
25,496	+				+0.9
25,496	+				-1.3
25,496	+				+0.1
25,496	+				-0.4
25,496	+				-0.4
25,496	+				-0.2
25,496	+				-0.1
25,496	+				-2.0
25,496	+				+0.2
25,496	+				-1.1
25,496	+				+0.1
25,496	+				-0.5
25,496	+				-0.6
25,496	+				-2.1
25,496	+				+0.8
25,496	+				-0.1
25,496	+				-0.7
25,496	+				-1.3
25,496	+				-0.9
25,496	+				+1.2
25,496	+				+1.1
25,496	+				+0.8
25,496	+				-0.5
25,496	+				+0.4
25,496	+				-1.6
25,496	+				-0.8
25,496	+				+1.5
25,496	+				-1.4
25,496	+				+0.0
25,496	+				-0.5
25,496	+				-2.4
25,496	+				-0.1
25,496	+				+0.2
25,496	+				-0.2
25,496	+				-0.4
25,496	+				+1.7
25,496	+				-0.8
25,496	+				-0.2
25,496	+				-0.4
25,496	+				-0.3
25,496	+				-0.5
25,496	+				+1.1
25,496	+				-1.6
25,496	+				+0.8
25,496	+				-0.8
25,501	+				+1.1
25,504	-				-0.2
25,504	-				-0.4
25,504	-				-0.4
25,504	-				+0.1
25,504	-				-1.2
25,504	-				+0.2
25,504	-				+1.0
25,504	-				+0.9
25,504	-				-1.6
25,504	-				-0.3
25,504	-				+0.4
25,504	-				-0.2
25,504	-				-1.8
25,504	-				+0.6
25,504	-				-0.6
25,504	-				+0.8
25,504	-				+0.8
25,504	-				-0.9
25,504	-				-2.2
25,504	-				-0.1
25,504	-				-0.6
25,504	-				-0.6
25,504	-				-0.2
25,504	-				-2.2
25,504	-				+1.5
25,504	-				+0.4
25,504	-				+0.4
25,504	-				-0.1
25,504	-				-0.1
25,504	-				+0.1
25,504	-				-0.1
25,504	-				+1.9
25,504	-				-0.1
25,504	-				-0.9
25,504	-				+0.3
25,504	-				+0.7
25,504	-				-0.2
25,504	-				-0.7
25,504	-				-1.6
25,504	-				-0.3
25,504	-				-0.1
25,504	-				+0.0
25,504	-				-1.0
25,504	-				-1.2
25,504	-				-1.3
25,504	-				-0.7
25,504	-				-0.5
25,504	-				+0.8
25,504	-				+0.8
25,504	-				-1.1
25,504	-				+0.3
25,509	-				-0.2
25,537	-				-0.5
25,576	+				+0.9
25,609	+				-0.3
25,627	-				-0.1
25,639	+				-0.2
25,663	-				+0.6
25,663	-				-0.9
25,666	+				+0.9
25,666	+				+0.5
25,669	+				+0.7
25,670	-				-0.5
25,670	-				-1.0
25,670	-				+0.4
25,670	-				-0.9
25,677	-				+0.2
25,688	+				-0.5
25,688	+				+0.4
25,688	+				-0.6
25,688	+				+1.0
25,688	+				+0.1
25,688	+				-0.4
25,688	+				-1.3
25,688	+				+0.7
25,688	+				+0.2
25,688	+				-0.3
25,688	+				+0.1
25,688	+				-0.8
25,689	-				+0.3
25,689	-				+1.3
25,696	-		PGA1_c00240	0.11	-0.2
25,696	-		PGA1_c00240	0.11	-0.3
25,696	-		PGA1_c00240	0.11	-1.5
25,696	-		PGA1_c00240	0.11	-1.2
25,696	-		PGA1_c00240	0.11	-1.4
25,696	-		PGA1_c00240	0.11	-0.7
25,696	-		PGA1_c00240	0.11	+0.1
25,740	-		PGA1_c00240	0.31	-0.1
25,740	-		PGA1_c00240	0.31	-0.7
25,742	+		PGA1_c00240	0.32	+0.9
25,742	+		PGA1_c00240	0.32	-0.3
25,742	+		PGA1_c00240	0.32	-0.0
25,742	+		PGA1_c00240	0.32	-1.8
25,742	+		PGA1_c00240	0.32	+0.6
25,747	+		PGA1_c00240	0.34	+0.3
25,747	+		PGA1_c00240	0.34	+0.3
25,747	+		PGA1_c00240	0.34	-1.3
25,750	-		PGA1_c00240	0.36	+1.0
25,750	-		PGA1_c00240	0.36	+1.2
25,750	-		PGA1_c00240	0.36	-0.3
25,750	-		PGA1_c00240	0.36	-1.4
25,750	-		PGA1_c00240	0.36	-0.8
25,755	-		PGA1_c00240	0.38	-0.2
25,755	-		PGA1_c00240	0.38	-0.0
25,755	-		PGA1_c00240	0.38	-3.5
25,755	-		PGA1_c00240	0.38	+0.2
25,757	+		PGA1_c00240	0.39	-0.4
25,760	-		PGA1_c00240	0.40	-2.6
25,808	+		PGA1_c00240	0.62	+0.0
25,824	-		PGA1_c00240	0.69	-2.2
25,824	-		PGA1_c00240	0.69	+0.6
25,849	-		PGA1_c00240	0.80	+1.6
25,851	+		PGA1_c00240	0.81	-0.2
25,851	+		PGA1_c00240	0.81	+1.1
25,851	+		PGA1_c00240	0.81	+0.5
25,851	+		PGA1_c00240	0.81	+0.1
25,851	+		PGA1_c00240	0.81	-1.5
25,851	+		PGA1_c00240	0.81	-0.3
25,851	+		PGA1_c00240	0.81	-0.8
25,851	+		PGA1_c00240	0.81	-0.6
25,851	+		PGA1_c00240	0.81	-1.8
25,851	+		PGA1_c00240	0.81	-0.8
25,859	-		PGA1_c00240	0.85	-1.1
25,859	-		PGA1_c00240	0.85	+1.1
25,859	-		PGA1_c00240	0.85	-0.4
25,859	-		PGA1_c00240	0.85	+0.3
25,859	-		PGA1_c00240	0.85	-0.5
25,859	-		PGA1_c00240	0.85	-0.6
25,859	-		PGA1_c00240	0.85	-0.1
25,859	-		PGA1_c00240	0.85	+1.2
25,866	+		PGA1_c00240	0.88	+1.4
25,875	+				+0.2
25,883	+				+0.8
25,883	+				+0.7
25,891	-				+0.8
25,891	-				+0.6
25,891	-				-0.8
25,891	-				-0.2
25,891	-				+0.2
25,892	+				-0.4
25,895	+				-0.7
25,898	-				+1.1
25,898	-				+0.5
25,900	+				+0.4
25,900	+				-1.2
25,905	+				-0.1
25,908	-				-0.8
25,944	-				-2.0
25,947	+				+0.7
25,947	+				-0.6
25,955	+				-0.0
25,955	-				+1.3
25,957	-				-1.2
25,966	+				+0.2
25,973	-				+0.1
25,974	-				+0.0
25,974	-				+0.3
25,998	+				-1.1
25,998	+				-0.5
25,998	+				-1.2
25,998	+				-0.4
26,000	+				-1.1
26,003	+				-1.4
26,006	-				-0.5
26,006	-				-0.0
26,006	-				+0.7
26,006	-				-1.3
26,006	-				-0.4
26,006	-				-0.1
26,008	+				+1.2
26,008	+				+0.1
26,011	-				-2.4
26,015	-				-1.2
26,016	-				+1.2
26,016	-				-0.6
26,016	-				+0.2
26,016	-				-0.2
26,033	+				-1.1
26,053	+				-0.1
26,056	-				-1.7
26,075	+				+0.0
26,085	+				+0.3
26,085	+				+0.4
26,085	+				-0.3
26,098	+				+0.5
26,098	+				+0.5
26,098	+				-1.0
26,100	+				-0.6
26,100	+				-0.1
26,106	-				+0.2
26,108	-				-1.3
26,112	+				-0.2
26,120	-				+1.0
26,173	-				+1.2
26,178	+				-0.4
26,182	-				+0.1
26,182	-				+1.8
26,186	-				-0.2
26,186	-				-0.0
26,201	+				-0.2
26,207	+				-0.7
26,209	+				-1.8
26,209	+				-0.0
26,214	+				+0.5
26,217	-				+1.1
26,217	-				+0.1
26,222	-				-0.5
26,241	+				-2.5
26,241	+				-0.5
26,250	+				-2.0
26,250	+				-0.1
26,250	+				-0.1
26,250	+				-0.8
26,250	+				+0.5
26,258	-				+0.6
26,258	-				+0.7
26,258	-				+0.1
26,284	-				+0.3
26,299	-				-0.8
26,330	+				+0.4
26,351	-				-0.5
26,351	-				+1.4
26,393	-				-0.4
26,404	+				+0.9
26,412	-				+0.1
26,429	+				-0.2
26,432	-				+0.5
26,434	+				+1.0
26,440	+				-0.6
26,440	+				-0.0
26,440	+				+0.3
26,440	+				-0.4
26,444	+				-2.9
26,446	+				+0.5
26,446	+				+0.7
26,448	-				+0.5
26,448	-				-0.6
26,452	-		PGA1_c00250	0.10	-0.1
26,452	-		PGA1_c00250	0.10	-2.0
26,452	-		PGA1_c00250	0.10	+1.0
26,452	-		PGA1_c00250	0.10	+0.6
26,454	-		PGA1_c00250	0.10	+0.9
26,484	+		PGA1_c00250	0.15	+0.8
26,484	+		PGA1_c00250	0.15	+0.4
26,484	+		PGA1_c00250	0.15	-0.9
26,484	+		PGA1_c00250	0.15	+0.2
26,485	-		PGA1_c00250	0.15	+1.2
26,490	-		PGA1_c00250	0.15	-0.5
26,492	-		PGA1_c00250	0.16	-0.7
26,492	-		PGA1_c00250	0.16	+0.3
26,497	-		PGA1_c00250	0.16	-0.5