Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02070 and PGA1_c02080 overlap by 1 nucleotides PGA1_c02080 and PGA1_c02090 overlap by 4 nucleotides PGA1_c02090 and PGA1_c02100 are separated by 439 nucleotides
PGA1_c02070: PGA1_c02070 - putative GTP binding protein EngB, at 189,252 to 189,902
_c02070
PGA1_c02080: PGA1_c02080 - Uncharacterized Fe-S protein, at 189,902 to 190,654
_c02080
PGA1_c02090: PGA1_c02090 - inner membrane protein OxaA, at 190,651 to 192,468
_c02090
PGA1_c02100: PGA1_c02100 - diguanylate cyclase (GGDEF) domain-containing protein, at 192,908 to 194,452
_c02100
Position (kb) 190
191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.549 kb on + strand at 192.580 kb on + strand at 192.667 kb on + strand at 192.715 kb on + strand at 192.723 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.785 kb on + strand at 192.785 kb on + strand at 192.799 kb on + strand at 192.804 kb on + strand at 192.807 kb on - strand at 192.812 kb on - strand at 192.834 kb on - strand at 192.863 kb on + strand at 192.868 kb on + strand at 192.897 kb on - strand at 192.982 kb on + strand at 193.014 kb on - strand at 193.018 kb on + strand at 193.093 kb on + strand, within PGA1_c02100 at 193.093 kb on + strand, within PGA1_c02100 at 193.096 kb on - strand, within PGA1_c02100 at 193.149 kb on - strand, within PGA1_c02100 at 193.149 kb on - strand, within PGA1_c02100 at 193.190 kb on - strand, within PGA1_c02100 at 193.205 kb on + strand, within PGA1_c02100 at 193.205 kb on - strand, within PGA1_c02100 at 193.213 kb on - strand, within PGA1_c02100 at 193.225 kb on + strand, within PGA1_c02100 at 193.226 kb on + strand, within PGA1_c02100 at 193.329 kb on + strand, within PGA1_c02100 at 193.339 kb on + strand, within PGA1_c02100 at 193.347 kb on - strand, within PGA1_c02100 at 193.373 kb on - strand, within PGA1_c02100 at 193.381 kb on + strand, within PGA1_c02100 at 193.386 kb on + strand, within PGA1_c02100 at 193.410 kb on + strand, within PGA1_c02100 at 193.420 kb on + strand, within PGA1_c02100 at 193.428 kb on - strand, within PGA1_c02100 at 193.449 kb on - strand, within PGA1_c02100 at 193.456 kb on + strand, within PGA1_c02100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 192,549 + -2.9 192,580 + -0.4 192,667 + +1.8 192,715 + -1.5 192,723 - +2.8 192,743 - -0.4 192,743 - +1.2 192,743 - +3.2 192,743 - +0.2 192,743 - +1.2 192,743 - +1.2 192,743 - +1.0 192,743 - -0.8 192,743 - +1.2 192,785 + -1.2 192,785 + -1.0 192,799 + -0.1 192,804 + +0.8 192,807 - +0.4 192,812 - +0.8 192,834 - +1.2 192,863 + +1.2 192,868 + +0.3 192,897 - -0.2 192,982 + +0.2 193,014 - +0.4 193,018 + -0.8 193,093 + PGA1_c02100 0.12 -0.2 193,093 + PGA1_c02100 0.12 +0.2 193,096 - PGA1_c02100 0.12 -1.2 193,149 - PGA1_c02100 0.16 +3.0 193,149 - PGA1_c02100 0.16 -0.2 193,190 - PGA1_c02100 0.18 +0.6 193,205 + PGA1_c02100 0.19 +1.2 193,205 - PGA1_c02100 0.19 -1.6 193,213 - PGA1_c02100 0.20 -0.4 193,225 + PGA1_c02100 0.21 -2.2 193,226 + PGA1_c02100 0.21 -1.4 193,329 + PGA1_c02100 0.27 -0.2 193,339 + PGA1_c02100 0.28 -0.1 193,347 - PGA1_c02100 0.28 -1.8 193,373 - PGA1_c02100 0.30 +1.2 193,381 + PGA1_c02100 0.31 +3.5 193,386 + PGA1_c02100 0.31 -1.5 193,410 + PGA1_c02100 0.32 +1.8 193,420 + PGA1_c02100 0.33 -1.5 193,428 - PGA1_c02100 0.34 -0.4 193,449 - PGA1_c02100 0.35 -1.6 193,456 + PGA1_c02100 0.35 -0.2
Or see this region's nucleotide sequence