Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12250 and PGA1_c12260 overlap by 4 nucleotides PGA1_c12260 and PGA1_c12270 are separated by 2 nucleotides PGA1_c12270 and PGA1_c12280 are separated by 264 nucleotides PGA1_c12280 and PGA1_c12290 overlap by 1 nucleotides
PGA1_c12250: PGA1_c12250 - monovalent cation/proton antiporter subunit D, at 1,270,002 to 1,271,564
_c12250
PGA1_c12260: PGA1_c12260 - monovalent cation/proton antiporter subunit C, at 1,271,561 to 1,271,914
_c12260
PGA1_c12270: PGA1_c12270 - monovalent cation/proton antiporter subunit A/B, at 1,271,917 to 1,274,778
_c12270
PGA1_c12280: PGA1_c12280 - Rhodanese-related sulfurtransferase, at 1,275,043 to 1,275,606
_c12280
PGA1_c12290: PGA1_c12290 - Poly(3-hydroxybutyrate) depolymerase, at 1,275,606 to 1,276,466
_c12290
Position (kb)
1271
1272
1273
1274
1275 Strain fitness (log2 ratio)
-1
0
1
2 at 1271.941 kb on - strand at 1274.866 kb on - strand at 1274.910 kb on + strand at 1274.915 kb on + strand at 1274.925 kb on + strand at 1274.963 kb on + strand at 1274.971 kb on - strand at 1275.023 kb on + strand at 1275.026 kb on + strand at 1275.083 kb on - strand at 1275.252 kb on - strand, within PGA1_c12280 at 1275.282 kb on + strand, within PGA1_c12280 at 1275.282 kb on + strand, within PGA1_c12280 at 1275.290 kb on - strand, within PGA1_c12280 at 1275.295 kb on - strand, within PGA1_c12280 at 1275.315 kb on - strand, within PGA1_c12280 at 1275.406 kb on - strand, within PGA1_c12280 at 1275.444 kb on + strand, within PGA1_c12280 at 1275.463 kb on + strand, within PGA1_c12280 at 1275.540 kb on - strand, within PGA1_c12280 at 1275.550 kb on + strand at 1275.603 kb on - strand at 1275.692 kb on + strand, within PGA1_c12290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 1,271,941 - +0.4 1,274,866 - +0.1 1,274,910 + +1.1 1,274,915 + +1.2 1,274,925 + +0.7 1,274,963 + -1.2 1,274,971 - +0.6 1,275,023 + +0.8 1,275,026 + -1.2 1,275,083 - -0.0 1,275,252 - PGA1_c12280 0.37 -0.3 1,275,282 + PGA1_c12280 0.42 +0.7 1,275,282 + PGA1_c12280 0.42 -0.7 1,275,290 - PGA1_c12280 0.44 +1.2 1,275,295 - PGA1_c12280 0.45 -0.9 1,275,315 - PGA1_c12280 0.48 +0.7 1,275,406 - PGA1_c12280 0.64 +0.2 1,275,444 + PGA1_c12280 0.71 -0.0 1,275,463 + PGA1_c12280 0.74 -0.8 1,275,540 - PGA1_c12280 0.88 +0.5 1,275,550 + +2.7 1,275,603 - -0.4 1,275,692 + PGA1_c12290 0.10 -0.0
Or see this region's nucleotide sequence