Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01020 and PGA1_c01030 are separated by 99 nucleotides PGA1_c01030 and PGA1_c01040 are separated by 59 nucleotides PGA1_c01040 and PGA1_c01050 are separated by 63 nucleotides PGA1_c01050 and PGA1_c01060 overlap by 4 nucleotides
PGA1_c01020: PGA1_c01020 - Uncharacterized protein conserved in bacteria, at 96,928 to 97,581
_c01020
PGA1_c01030: PGA1_c01030 - pyridoxine 5'-phosphate synthase PdxJ, at 97,681 to 98,442
_c01030
PGA1_c01040: PGA1_c01040 - holo-[acyl-carrier-protein] synthase AcpS, at 98,502 to 98,933
_c01040
PGA1_c01050: PGA1_c01050 - putative signal peptidase I, at 98,997 to 99,833
_c01050
PGA1_c01060: PGA1_c01060 - ribonuclease 3, at 99,830 to 100,516
_c01060
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.559 kb on + strand at 97.575 kb on + strand at 97.621 kb on + strand at 97.621 kb on + strand at 97.629 kb on - strand at 97.631 kb on + strand at 97.642 kb on + strand at 98.481 kb on - strand at 98.488 kb on + strand at 98.491 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.498 kb on + strand at 98.505 kb on + strand at 98.513 kb on + strand at 98.554 kb on + strand, within PGA1_c01040 at 98.599 kb on + strand, within PGA1_c01040 at 98.607 kb on - strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.616 kb on + strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.654 kb on + strand, within PGA1_c01040 at 98.685 kb on - strand, within PGA1_c01040 at 98.697 kb on + strand, within PGA1_c01040 at 98.697 kb on + strand, within PGA1_c01040 at 98.800 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.863 kb on - strand, within PGA1_c01040 at 98.867 kb on + strand, within PGA1_c01040 at 98.875 kb on - strand, within PGA1_c01040 at 99.838 kb on + strand at 99.846 kb on - strand at 99.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 97,559 + +0.2 97,575 + -0.2 97,621 + -2.4 97,621 + -0.9 97,629 - -0.8 97,631 + +0.9 97,642 + -0.1 98,481 - +1.3 98,488 + -0.0 98,491 - -0.2 98,496 - +1.2 98,496 - +0.5 98,496 - -0.1 98,498 + +0.3 98,505 + +0.2 98,513 + -0.7 98,554 + PGA1_c01040 0.12 +0.2 98,599 + PGA1_c01040 0.22 +0.1 98,607 - PGA1_c01040 0.24 +1.7 98,609 + PGA1_c01040 0.25 +1.5 98,609 + PGA1_c01040 0.25 +0.4 98,609 + PGA1_c01040 0.25 +1.9 98,609 + PGA1_c01040 0.25 +0.8 98,609 + PGA1_c01040 0.25 -0.7 98,609 + PGA1_c01040 0.25 +0.8 98,609 + PGA1_c01040 0.25 -0.4 98,609 + PGA1_c01040 0.25 -1.2 98,609 + PGA1_c01040 0.25 +0.5 98,609 + PGA1_c01040 0.25 -0.3 98,609 + PGA1_c01040 0.25 -1.8 98,609 + PGA1_c01040 0.25 +1.1 98,609 + PGA1_c01040 0.25 +0.3 98,616 + PGA1_c01040 0.26 +0.9 98,617 - PGA1_c01040 0.27 -2.2 98,617 - PGA1_c01040 0.27 -0.3 98,617 - PGA1_c01040 0.27 -0.1 98,617 - PGA1_c01040 0.27 -0.7 98,617 - PGA1_c01040 0.27 +0.4 98,617 - PGA1_c01040 0.27 +0.3 98,617 - PGA1_c01040 0.27 +0.5 98,617 - PGA1_c01040 0.27 -2.3 98,617 - PGA1_c01040 0.27 -1.1 98,617 - PGA1_c01040 0.27 -2.8 98,617 - PGA1_c01040 0.27 -1.6 98,617 - PGA1_c01040 0.27 -0.8 98,617 - PGA1_c01040 0.27 +0.8 98,617 - PGA1_c01040 0.27 -2.8 98,617 - PGA1_c01040 0.27 -2.0 98,617 - PGA1_c01040 0.27 +0.5 98,617 - PGA1_c01040 0.27 +0.9 98,617 - PGA1_c01040 0.27 -1.1 98,654 + PGA1_c01040 0.35 +0.1 98,685 - PGA1_c01040 0.42 +2.2 98,697 + PGA1_c01040 0.45 +0.6 98,697 + PGA1_c01040 0.45 +0.2 98,800 + PGA1_c01040 0.69 -0.9 98,855 + PGA1_c01040 0.82 -0.4 98,855 + PGA1_c01040 0.82 +0.1 98,855 + PGA1_c01040 0.82 +0.8 98,863 - PGA1_c01040 0.84 -0.0 98,867 + PGA1_c01040 0.84 -0.4 98,875 - PGA1_c01040 0.86 +0.4 99,838 + +2.0 99,846 - -2.2 99,846 - -1.6
Or see this region's nucleotide sequence