Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3316 and Dsui_3317 are separated by 105 nucleotides Dsui_3317 and Dsui_3318 are separated by 88 nucleotides Dsui_3318 and Dsui_3319 are separated by 226 nucleotides
Dsui_3316: Dsui_3316 - Gram-negative bacterial tonB protein, at 3,556,516 to 3,557,289
_3316
Dsui_3317: Dsui_3317 - cytochrome c551/c552, at 3,557,395 to 3,557,733
_3317
Dsui_3318: Dsui_3318 - cytochrome c, mono- and diheme variants family, at 3,557,822 to 3,559,462
_3318
Dsui_3319: Dsui_3319 - uroporphyrin-III C-methyltransferase, at 3,559,689 to 3,560,486
_3319
Position (kb)
3557
3558
3559
3560 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3556.845 kb on - strand, within Dsui_3316 at 3556.964 kb on + strand, within Dsui_3316 at 3556.972 kb on - strand, within Dsui_3316 at 3557.093 kb on + strand at 3557.116 kb on - strand, within Dsui_3316 at 3557.177 kb on - strand, within Dsui_3316 at 3557.187 kb on - strand, within Dsui_3316 at 3557.239 kb on + strand at 3557.294 kb on + strand at 3557.506 kb on - strand at 3557.506 kb on - strand, within Dsui_3317 at 3557.705 kb on - strand at 3557.705 kb on - strand at 3557.707 kb on + strand at 3557.715 kb on - strand at 3557.833 kb on - strand at 3557.837 kb on - strand at 3558.028 kb on - strand, within Dsui_3318 at 3558.028 kb on - strand, within Dsui_3318 at 3558.035 kb on - strand, within Dsui_3318 at 3558.070 kb on + strand, within Dsui_3318 at 3558.070 kb on + strand at 3558.075 kb on + strand, within Dsui_3318 at 3558.078 kb on - strand, within Dsui_3318 at 3558.082 kb on - strand, within Dsui_3318 at 3558.095 kb on - strand, within Dsui_3318 at 3558.113 kb on - strand, within Dsui_3318 at 3558.189 kb on + strand at 3558.304 kb on + strand, within Dsui_3318 at 3558.312 kb on - strand, within Dsui_3318 at 3558.371 kb on - strand, within Dsui_3318 at 3558.448 kb on - strand, within Dsui_3318 at 3558.466 kb on + strand at 3558.563 kb on - strand, within Dsui_3318 at 3558.573 kb on - strand, within Dsui_3318 at 3558.605 kb on - strand, within Dsui_3318 at 3558.683 kb on - strand at 3558.689 kb on - strand, within Dsui_3318 at 3558.707 kb on + strand, within Dsui_3318 at 3558.727 kb on - strand, within Dsui_3318 at 3558.768 kb on + strand at 3558.859 kb on + strand, within Dsui_3318 at 3558.959 kb on - strand, within Dsui_3318 at 3558.959 kb on - strand, within Dsui_3318 at 3559.006 kb on + strand at 3559.014 kb on - strand, within Dsui_3318 at 3559.073 kb on + strand at 3559.146 kb on - strand, within Dsui_3318 at 3559.160 kb on - strand, within Dsui_3318 at 3559.170 kb on + strand, within Dsui_3318 at 3559.249 kb on - strand, within Dsui_3318 at 3559.260 kb on - strand, within Dsui_3318 at 3559.294 kb on - strand, within Dsui_3318 at 3559.301 kb on - strand at 3559.301 kb on - strand at 3559.327 kb on + strand at 3559.340 kb on - strand at 3559.340 kb on - strand at 3559.393 kb on - strand at 3559.417 kb on - strand at 3559.463 kb on + strand at 3559.476 kb on - strand at 3559.504 kb on - strand at 3559.504 kb on - strand at 3559.511 kb on - strand at 3559.533 kb on - strand at 3559.558 kb on - strand at 3559.607 kb on - strand at 3559.646 kb on + strand at 3559.651 kb on + strand at 3559.717 kb on + strand at 3559.719 kb on - strand at 3559.725 kb on - strand at 3559.888 kb on - strand at 3559.899 kb on - strand, within Dsui_3319 at 3559.906 kb on + strand, within Dsui_3319 at 3560.122 kb on + strand, within Dsui_3319 at 3560.196 kb on + strand, within Dsui_3319 at 3560.196 kb on + strand, within Dsui_3319 at 3560.204 kb on - strand at 3560.318 kb on - strand at 3560.323 kb on + strand, within Dsui_3319 at 3560.338 kb on + strand, within Dsui_3319 at 3560.342 kb on + strand, within Dsui_3319
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 3,556,845 - Dsui_3316 0.43 +0.3 3,556,964 + Dsui_3316 0.58 -0.2 3,556,972 - Dsui_3316 0.59 -0.5 3,557,093 + -0.2 3,557,116 - Dsui_3316 0.78 +0.2 3,557,177 - Dsui_3316 0.85 +0.4 3,557,187 - Dsui_3316 0.87 +1.4 3,557,239 + -0.4 3,557,294 + -0.1 3,557,506 - +0.8 3,557,506 - Dsui_3317 0.33 +1.0 3,557,705 - -0.2 3,557,705 - +1.3 3,557,707 + -0.4 3,557,715 - +0.8 3,557,833 - -0.1 3,557,837 - +0.1 3,558,028 - Dsui_3318 0.13 -1.2 3,558,028 - Dsui_3318 0.13 +0.7 3,558,035 - Dsui_3318 0.13 -0.2 3,558,070 + Dsui_3318 0.15 -0.6 3,558,070 + +1.0 3,558,075 + Dsui_3318 0.15 -1.2 3,558,078 - Dsui_3318 0.16 +0.0 3,558,082 - Dsui_3318 0.16 -0.6 3,558,095 - Dsui_3318 0.17 +1.2 3,558,113 - Dsui_3318 0.18 -0.1 3,558,189 + +1.8 3,558,304 + Dsui_3318 0.29 +0.6 3,558,312 - Dsui_3318 0.30 +0.5 3,558,371 - Dsui_3318 0.33 -0.1 3,558,448 - Dsui_3318 0.38 +0.5 3,558,466 + +0.2 3,558,563 - Dsui_3318 0.45 +0.2 3,558,573 - Dsui_3318 0.46 +0.7 3,558,605 - Dsui_3318 0.48 +1.6 3,558,683 - +1.0 3,558,689 - Dsui_3318 0.53 -2.2 3,558,707 + Dsui_3318 0.54 +1.2 3,558,727 - Dsui_3318 0.55 +0.8 3,558,768 + -0.2 3,558,859 + Dsui_3318 0.63 +0.4 3,558,959 - Dsui_3318 0.69 -1.0 3,558,959 - Dsui_3318 0.69 +0.6 3,559,006 + +0.2 3,559,014 - Dsui_3318 0.73 +0.2 3,559,073 + +0.8 3,559,146 - Dsui_3318 0.81 -0.6 3,559,160 - Dsui_3318 0.82 +0.4 3,559,170 + Dsui_3318 0.82 +0.6 3,559,249 - Dsui_3318 0.87 -0.4 3,559,260 - Dsui_3318 0.88 +0.3 3,559,294 - Dsui_3318 0.90 +0.8 3,559,301 - +1.0 3,559,301 - +0.3 3,559,327 + +0.5 3,559,340 - -0.1 3,559,340 - -0.6 3,559,393 - +0.2 3,559,417 - -0.2 3,559,463 + -0.2 3,559,476 - -0.1 3,559,504 - -0.4 3,559,504 - +0.3 3,559,511 - +1.2 3,559,533 - +0.3 3,559,558 - -0.8 3,559,607 - -0.2 3,559,646 + -0.8 3,559,651 + +1.9 3,559,717 + +2.1 3,559,719 - +0.0 3,559,725 - -0.7 3,559,888 - +1.3 3,559,899 - Dsui_3319 0.26 +0.8 3,559,906 + Dsui_3319 0.27 +1.1 3,560,122 + Dsui_3319 0.54 +0.7 3,560,196 + Dsui_3319 0.64 -0.2 3,560,196 + Dsui_3319 0.64 +1.1 3,560,204 - -0.2 3,560,318 - +3.6 3,560,323 + Dsui_3319 0.79 +0.3 3,560,338 + Dsui_3319 0.81 +0.3 3,560,342 + Dsui_3319 0.82 +0.3
Or see this region's nucleotide sequence