Strain Fitness in Dechlorosoma suillum PS around Dsui_2924

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2923 and Dsui_2924 are separated by 12 nucleotidesDsui_2924 and Dsui_2925 are separated by 246 nucleotides Dsui_2923: Dsui_2923 - esterase/lipase, at 3,125,669 to 3,126,511 _2923 Dsui_2924: Dsui_2924 - hypothetical protein, at 3,126,524 to 3,127,285 _2924 Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424 _2925 Position (kb) 3126 3127 3128Strain fitness (log2 ratio) -1 0 1 2 3 4at 3125.599 kb on + strandat 3125.607 kb on - strandat 3125.808 kb on + strand, within Dsui_2923at 3125.808 kb on + strand, within Dsui_2923at 3125.814 kb on - strandat 3125.816 kb on - strandat 3125.816 kb on - strandat 3125.949 kb on + strand, within Dsui_2923at 3126.057 kb on + strand, within Dsui_2923at 3126.086 kb on + strand, within Dsui_2923at 3126.094 kb on - strandat 3126.097 kb on + strand, within Dsui_2923at 3126.097 kb on + strand, within Dsui_2923at 3126.123 kb on + strand, within Dsui_2923at 3126.201 kb on + strandat 3126.209 kb on - strandat 3126.290 kb on - strand, within Dsui_2923at 3126.341 kb on - strandat 3126.360 kb on + strand, within Dsui_2923at 3126.405 kb on + strand, within Dsui_2923at 3126.411 kb on - strand, within Dsui_2923at 3126.411 kb on - strand, within Dsui_2923at 3126.474 kb on - strandat 3126.494 kb on - strandat 3126.619 kb on - strand, within Dsui_2924at 3126.775 kb on - strandat 3126.942 kb on - strand, within Dsui_2924at 3127.041 kb on + strand, within Dsui_2924at 3127.548 kb on + strandat 3127.556 kb on - strandat 3127.556 kb on - strandat 3127.556 kb on - strandat 3127.785 kb on + strand, within Dsui_2925at 3127.793 kb on - strand, within Dsui_2925at 3127.840 kb on - strand, within Dsui_2925at 3127.869 kb on - strand, within Dsui_2925at 3127.874 kb on - strand, within Dsui_2925at 3127.943 kb on + strandat 3127.995 kb on + strand, within Dsui_2925at 3128.010 kb on + strand, within Dsui_2925at 3128.018 kb on - strand, within Dsui_2925at 3128.020 kb on + strand, within Dsui_2925at 3128.117 kb on - strand, within Dsui_2925at 3128.173 kb on - strand, within Dsui_2925at 3128.188 kb on - strand, within Dsui_2925at 3128.209 kb on + strand, within Dsui_2925at 3128.233 kb on + strand, within Dsui_2925at 3128.247 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,125,599 + +0.6
3,125,607 - +2.9
3,125,808 + Dsui_2923 0.16 -0.4
3,125,808 + Dsui_2923 0.16 +0.4
3,125,814 - +1.9
3,125,816 - +3.9
3,125,816 - +1.9
3,125,949 + Dsui_2923 0.33 +0.5
3,126,057 + Dsui_2923 0.46 +0.8
3,126,086 + Dsui_2923 0.49 +0.4
3,126,094 - +2.4
3,126,097 + Dsui_2923 0.51 +0.8
3,126,097 + Dsui_2923 0.51 +0.7
3,126,123 + Dsui_2923 0.54 +0.5
3,126,201 + +0.3
3,126,209 - +0.9
3,126,290 - Dsui_2923 0.74 +0.3
3,126,341 - +0.3
3,126,360 + Dsui_2923 0.82 +1.9
3,126,405 + Dsui_2923 0.87 -0.7
3,126,411 - Dsui_2923 0.88 -0.8
3,126,411 - Dsui_2923 0.88 -0.5
3,126,474 - +0.9
3,126,494 - +0.7
3,126,619 - Dsui_2924 0.12 +1.3
3,126,775 - +1.9
3,126,942 - Dsui_2924 0.55 -1.1
3,127,041 + Dsui_2924 0.68 +0.8
3,127,548 + +0.6
3,127,556 - +0.8
3,127,556 - +1.6
3,127,556 - +0.7
3,127,785 + Dsui_2925 0.13 +0.4
3,127,793 - Dsui_2925 0.14 +1.4
3,127,840 - Dsui_2925 0.16 +0.1
3,127,869 - Dsui_2925 0.18 -1.2
3,127,874 - Dsui_2925 0.18 -0.8
3,127,943 + -0.5
3,127,995 + Dsui_2925 0.24 +0.0
3,128,010 + Dsui_2925 0.25 -1.2
3,128,018 - Dsui_2925 0.26 -0.6
3,128,020 + Dsui_2925 0.26 -0.5
3,128,117 - Dsui_2925 0.31 +0.0
3,128,173 - Dsui_2925 0.34 -0.7
3,128,188 - Dsui_2925 0.35 +0.3
3,128,209 + Dsui_2925 0.36 +0.1
3,128,233 + Dsui_2925 0.37 -0.3
3,128,247 + +0.8

Or see this region's nucleotide sequence