Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2878 and Dsui_2879 are separated by 318 nucleotides Dsui_2879 and Dsui_2880 are separated by 231 nucleotides
Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690
_2878
Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505
_2879
Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080
_2880
Position (kb)
3074
3075
3076 Strain fitness (log2 ratio)
-1
0
1 at 3073.085 kb on + strand, within Dsui_2878 at 3073.228 kb on - strand, within Dsui_2878 at 3073.417 kb on + strand, within Dsui_2878 at 3073.514 kb on - strand, within Dsui_2878 at 3073.715 kb on - strand at 3073.716 kb on + strand at 3073.729 kb on + strand at 3073.764 kb on + strand at 3073.805 kb on - strand at 3073.821 kb on + strand at 3073.829 kb on - strand at 3074.155 kb on - strand at 3074.588 kb on + strand, within Dsui_2879 at 3074.685 kb on + strand at 3074.734 kb on + strand, within Dsui_2879 at 3074.882 kb on - strand, within Dsui_2879 at 3074.917 kb on - strand, within Dsui_2879 at 3075.027 kb on + strand at 3075.048 kb on + strand, within Dsui_2879 at 3075.062 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.305 kb on - strand, within Dsui_2879 at 3075.399 kb on - strand at 3075.470 kb on - strand at 3075.526 kb on + strand at 3075.526 kb on + strand at 3075.528 kb on + strand at 3075.536 kb on - strand at 3075.656 kb on + strand at 3075.669 kb on + strand at 3075.687 kb on - strand at 3075.701 kb on + strand at 3075.720 kb on + strand at 3075.720 kb on - strand at 3075.733 kb on + strand at 3075.842 kb on + strand at 3075.858 kb on + strand at 3075.978 kb on - strand, within Dsui_2880 at 3076.112 kb on + strand, within Dsui_2880 at 3076.205 kb on - strand at 3076.245 kb on - strand, within Dsui_2880 at 3076.264 kb on - strand at 3076.264 kb on - strand, within Dsui_2880 at 3076.429 kb on + strand, within Dsui_2880 at 3076.455 kb on + strand, within Dsui_2880
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 3,073,085 + Dsui_2878 0.50 +0.4 3,073,228 - Dsui_2878 0.62 -0.2 3,073,417 + Dsui_2878 0.78 -1.5 3,073,514 - Dsui_2878 0.86 -1.1 3,073,715 - +0.3 3,073,716 + -0.6 3,073,729 + +0.1 3,073,764 + -0.6 3,073,805 - +0.1 3,073,821 + -0.9 3,073,829 - +0.6 3,074,155 - +0.9 3,074,588 + Dsui_2879 0.39 +0.1 3,074,685 + +0.9 3,074,734 + Dsui_2879 0.48 +0.4 3,074,882 - Dsui_2879 0.58 +1.0 3,074,917 - Dsui_2879 0.61 -0.4 3,075,027 + +0.3 3,075,048 + Dsui_2879 0.69 -1.3 3,075,062 - Dsui_2879 0.70 -0.4 3,075,149 - Dsui_2879 0.76 +0.1 3,075,149 - Dsui_2879 0.76 +0.3 3,075,305 - Dsui_2879 0.87 +1.1 3,075,399 - +0.4 3,075,470 - +0.4 3,075,526 + +0.9 3,075,526 + -0.1 3,075,528 + +1.3 3,075,536 - +0.8 3,075,656 + +0.3 3,075,669 + +1.1 3,075,687 - +0.6 3,075,701 + +0.5 3,075,720 + -0.5 3,075,720 - -1.3 3,075,733 + +0.4 3,075,842 + -0.0 3,075,858 + -0.0 3,075,978 - Dsui_2880 0.18 +0.8 3,076,112 + Dsui_2880 0.28 -0.4 3,076,205 - +0.3 3,076,245 - Dsui_2880 0.38 -1.3 3,076,264 - -1.3 3,076,264 - Dsui_2880 0.39 -0.0 3,076,429 + Dsui_2880 0.51 -0.2 3,076,455 + Dsui_2880 0.53 +1.2
Or see this region's nucleotide sequence