Strain Fitness in Dechlorosoma suillum PS around Dsui_2871

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2870 and Dsui_2871 are separated by 69 nucleotidesDsui_2871 and Dsui_2872 are separated by 176 nucleotidesDsui_2872 and Dsui_2873 are separated by 10 nucleotides Dsui_2870: Dsui_2870 - putative permease, at 3,064,913 to 3,065,839 _2870 Dsui_2871: Dsui_2871 - FHA domain-containing protein, at 3,065,909 to 3,066,799 _2871 Dsui_2872: Dsui_2872 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,066,976 to 3,067,464 _2872 Dsui_2873: Dsui_2873 - Peroxiredoxin, at 3,067,475 to 3,067,939 _2873 Position (kb) 3065 3066 3067Strain fitness (log2 ratio) -1 0 1 2 3at 3065.006 kb on + strand, within Dsui_2870at 3065.133 kb on + strand, within Dsui_2870at 3065.154 kb on + strand, within Dsui_2870at 3065.267 kb on + strand, within Dsui_2870at 3065.326 kb on + strand, within Dsui_2870at 3065.467 kb on + strand, within Dsui_2870at 3065.482 kb on + strand, within Dsui_2870at 3065.594 kb on + strand, within Dsui_2870at 3065.757 kb on + strandat 3065.805 kb on + strandat 3065.847 kb on - strandat 3065.967 kb on - strandat 3065.975 kb on - strandat 3066.197 kb on + strandat 3066.624 kb on - strand, within Dsui_2871at 3066.626 kb on + strandat 3066.665 kb on + strand, within Dsui_2871at 3066.776 kb on + strandat 3066.833 kb on - strandat 3066.833 kb on - strandat 3066.865 kb on + strandat 3066.890 kb on + strandat 3067.064 kb on - strand, within Dsui_2872at 3067.066 kb on - strand, within Dsui_2872at 3067.092 kb on - strand, within Dsui_2872at 3067.097 kb on - strand, within Dsui_2872at 3067.243 kb on - strand, within Dsui_2872at 3067.310 kb on + strand, within Dsui_2872at 3067.318 kb on - strand, within Dsui_2872at 3067.433 kb on + strandat 3067.583 kb on - strand, within Dsui_2873

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,065,006 + Dsui_2870 0.10 +1.5
3,065,133 + Dsui_2870 0.24 -1.6
3,065,154 + Dsui_2870 0.26 +0.8
3,065,267 + Dsui_2870 0.38 -0.1
3,065,326 + Dsui_2870 0.45 +0.9
3,065,467 + Dsui_2870 0.60 +0.9
3,065,482 + Dsui_2870 0.61 +0.3
3,065,594 + Dsui_2870 0.73 +0.1
3,065,757 + +3.5
3,065,805 + +0.3
3,065,847 - +0.6
3,065,967 - -0.4
3,065,975 - +0.5
3,066,197 + +0.9
3,066,624 - Dsui_2871 0.80 -0.1
3,066,626 + +1.9
3,066,665 + Dsui_2871 0.85 +1.3
3,066,776 + +1.3
3,066,833 - +0.9
3,066,833 - +0.4
3,066,865 + -1.1
3,066,890 + -0.4
3,067,064 - Dsui_2872 0.18 +0.7
3,067,066 - Dsui_2872 0.18 +0.1
3,067,092 - Dsui_2872 0.24 -0.7
3,067,097 - Dsui_2872 0.25 -0.4
3,067,243 - Dsui_2872 0.55 -0.1
3,067,310 + Dsui_2872 0.68 -0.1
3,067,318 - Dsui_2872 0.70 +0.3
3,067,433 + +0.9
3,067,583 - Dsui_2873 0.23 -1.0

Or see this region's nucleotide sequence