Strain Fitness in Dechlorosoma suillum PS around Dsui_2868

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2867 and Dsui_2868 are separated by 46 nucleotidesDsui_2868 and Dsui_2869 overlap by 17 nucleotides Dsui_2867: Dsui_2867 - surface antigen family protein, at 3,061,146 to 3,061,844 _2867 Dsui_2868: Dsui_2868 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein, at 3,061,891 to 3,063,858 _2868 Dsui_2869: Dsui_2869 - transcriptional regulator, at 3,063,842 to 3,064,813 _2869 Position (kb) 3061 3062 3063 3064Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3060.891 kb on - strandat 3061.082 kb on + strandat 3061.136 kb on + strandat 3061.424 kb on + strand, within Dsui_2867at 3061.424 kb on + strand, within Dsui_2867at 3061.472 kb on + strand, within Dsui_2867at 3061.555 kb on - strandat 3061.750 kb on + strand, within Dsui_2867at 3061.755 kb on + strandat 3061.805 kb on + strandat 3061.888 kb on + strandat 3061.938 kb on + strandat 3062.018 kb on + strandat 3062.256 kb on + strand, within Dsui_2868at 3062.366 kb on + strand, within Dsui_2868at 3062.389 kb on + strand, within Dsui_2868at 3062.730 kb on - strand, within Dsui_2868at 3062.839 kb on - strandat 3062.893 kb on + strandat 3062.956 kb on + strand, within Dsui_2868at 3063.078 kb on - strand, within Dsui_2868at 3063.130 kb on - strandat 3063.243 kb on + strand, within Dsui_2868at 3063.313 kb on + strandat 3063.545 kb on + strand, within Dsui_2868at 3063.569 kb on + strand, within Dsui_2868at 3063.668 kb on + strandat 3063.668 kb on + strandat 3063.736 kb on + strandat 3063.794 kb on + strandat 3063.794 kb on + strandat 3063.825 kb on + strandat 3063.833 kb on - strandat 3063.946 kb on - strand, within Dsui_2869at 3063.947 kb on - strand, within Dsui_2869at 3064.002 kb on + strand, within Dsui_2869at 3064.194 kb on - strand, within Dsui_2869at 3064.356 kb on + strand, within Dsui_2869at 3064.465 kb on + strand, within Dsui_2869at 3064.545 kb on - strand, within Dsui_2869at 3064.632 kb on - strand, within Dsui_2869at 3064.633 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,060,891 - +0.3
3,061,082 + -0.1
3,061,136 + +0.9
3,061,424 + Dsui_2867 0.40 -0.1
3,061,424 + Dsui_2867 0.40 -2.6
3,061,472 + Dsui_2867 0.47 +0.9
3,061,555 - +0.9
3,061,750 + Dsui_2867 0.86 -1.2
3,061,755 + +0.3
3,061,805 + -0.9
3,061,888 + +0.3
3,061,938 + +0.0
3,062,018 + -0.7
3,062,256 + Dsui_2868 0.19 -1.1
3,062,366 + Dsui_2868 0.24 -2.1
3,062,389 + Dsui_2868 0.25 +0.0
3,062,730 - Dsui_2868 0.43 +1.1
3,062,839 - +0.9
3,062,893 + +0.9
3,062,956 + Dsui_2868 0.54 +0.1
3,063,078 - Dsui_2868 0.60 +1.1
3,063,130 - +0.6
3,063,243 + Dsui_2868 0.69 +2.3
3,063,313 + +1.9
3,063,545 + Dsui_2868 0.84 +0.9
3,063,569 + Dsui_2868 0.85 +1.0
3,063,668 + +0.3
3,063,668 + +1.1
3,063,736 + +2.9
3,063,794 + +0.3
3,063,794 + -0.7
3,063,825 + +0.1
3,063,833 - +0.3
3,063,946 - Dsui_2869 0.11 +1.9
3,063,947 - Dsui_2869 0.11 -0.3
3,064,002 + Dsui_2869 0.16 -2.0
3,064,194 - Dsui_2869 0.36 -0.9
3,064,356 + Dsui_2869 0.53 -1.8
3,064,465 + Dsui_2869 0.64 -0.3
3,064,545 - Dsui_2869 0.72 -0.5
3,064,632 - Dsui_2869 0.81 +0.2
3,064,633 + -0.1

Or see this region's nucleotide sequence