Strain Fitness in Dechlorosoma suillum PS around Dsui_2827

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2825 and Dsui_2826 are separated by 33 nucleotidesDsui_2826 and Dsui_2827 are separated by 204 nucleotidesDsui_2827 and Dsui_2828 are separated by 59 nucleotides Dsui_2825: Dsui_2825 - hypothetical protein, at 3,001,095 to 3,004,202 _2825 Dsui_2826: Dsui_2826 - hypothetical protein, at 3,004,236 to 3,004,346 _2826 Dsui_2827: Dsui_2827 - hypothetical protein, at 3,004,551 to 3,005,000 _2827 Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079 _2828 Position (kb) 3004 3005 3006Strain fitness (log2 ratio) -2 -1 0 1at 3003.575 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.588 kb on - strand, within Dsui_2825at 3003.636 kb on - strandat 3003.647 kb on - strandat 3003.773 kb on - strand, within Dsui_2825at 3003.782 kb on - strand, within Dsui_2825at 3003.802 kb on - strand, within Dsui_2825at 3003.860 kb on + strand, within Dsui_2825at 3003.868 kb on - strand, within Dsui_2825at 3003.976 kb on - strandat 3004.021 kb on - strandat 3004.037 kb on + strandat 3004.040 kb on - strandat 3004.052 kb on + strandat 3004.102 kb on - strandat 3004.131 kb on + strandat 3004.200 kb on - strandat 3004.284 kb on - strand, within Dsui_2826at 3004.346 kb on + strandat 3004.354 kb on - strandat 3004.427 kb on + strandat 3004.427 kb on + strandat 3004.435 kb on - strandat 3004.504 kb on - strandat 3004.577 kb on - strandat 3004.591 kb on + strandat 3004.610 kb on + strand, within Dsui_2827at 3004.645 kb on + strand, within Dsui_2827at 3004.645 kb on + strand, within Dsui_2827at 3004.669 kb on - strand, within Dsui_2827at 3004.693 kb on + strand, within Dsui_2827at 3004.721 kb on - strand, within Dsui_2827at 3004.740 kb on - strand, within Dsui_2827at 3004.897 kb on + strand, within Dsui_2827at 3004.903 kb on + strand, within Dsui_2827at 3004.905 kb on + strand, within Dsui_2827at 3004.915 kb on - strand, within Dsui_2827at 3004.971 kb on + strandat 3005.051 kb on + strandat 3005.111 kb on + strandat 3005.129 kb on - strandat 3005.196 kb on - strand, within Dsui_2828at 3005.248 kb on - strand, within Dsui_2828at 3005.280 kb on + strand, within Dsui_2828at 3005.297 kb on + strandat 3005.472 kb on + strand, within Dsui_2828at 3005.572 kb on + strand, within Dsui_2828at 3005.636 kb on + strand, within Dsui_2828at 3005.644 kb on - strandat 3005.644 kb on - strand, within Dsui_2828at 3005.665 kb on + strand, within Dsui_2828at 3005.724 kb on - strandat 3005.764 kb on + strand, within Dsui_2828at 3005.825 kb on - strand, within Dsui_2828at 3005.851 kb on + strand, within Dsui_2828at 3005.862 kb on + strand, within Dsui_2828at 3005.971 kb on - strand, within Dsui_2828at 3005.978 kb on - strandat 3005.978 kb on - strandat 3005.982 kb on + strandat 3005.990 kb on - strandat 3005.990 kb on - strandat 3005.992 kb on + strandat 3005.992 kb on + strandat 3005.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,003,575 + Dsui_2825 0.80 +0.7
3,003,580 + Dsui_2825 0.80 +0.4
3,003,580 + Dsui_2825 0.80 -0.4
3,003,580 + Dsui_2825 0.80 +0.2
3,003,580 + Dsui_2825 0.80 -0.1
3,003,588 - Dsui_2825 0.80 -1.1
3,003,636 - -0.9
3,003,647 - -0.4
3,003,773 - Dsui_2825 0.86 -0.2
3,003,782 - Dsui_2825 0.86 +0.3
3,003,802 - Dsui_2825 0.87 +0.5
3,003,860 + Dsui_2825 0.89 +0.6
3,003,868 - Dsui_2825 0.89 -0.1
3,003,976 - +0.1
3,004,021 - -0.1
3,004,037 + -0.3
3,004,040 - +0.8
3,004,052 + +0.1
3,004,102 - +0.0
3,004,131 + +0.0
3,004,200 - -1.5
3,004,284 - Dsui_2826 0.43 -0.9
3,004,346 + +0.3
3,004,354 - -1.5
3,004,427 + -1.2
3,004,427 + +0.2
3,004,435 - -0.3
3,004,504 - +0.5
3,004,577 - -0.2
3,004,591 + +0.4
3,004,610 + Dsui_2827 0.13 -0.0
3,004,645 + Dsui_2827 0.21 +0.9
3,004,645 + Dsui_2827 0.21 -0.6
3,004,669 - Dsui_2827 0.26 -0.7
3,004,693 + Dsui_2827 0.32 -0.6
3,004,721 - Dsui_2827 0.38 -1.9
3,004,740 - Dsui_2827 0.42 -0.1
3,004,897 + Dsui_2827 0.77 +0.3
3,004,903 + Dsui_2827 0.78 -0.5
3,004,905 + Dsui_2827 0.79 -0.6
3,004,915 - Dsui_2827 0.81 -0.9
3,004,971 + -0.1
3,005,051 + -1.7
3,005,111 + +0.3
3,005,129 - +0.3
3,005,196 - Dsui_2828 0.13 +0.3
3,005,248 - Dsui_2828 0.18 +0.1
3,005,280 + Dsui_2828 0.22 -1.6
3,005,297 + +0.6
3,005,472 + Dsui_2828 0.40 -0.1
3,005,572 + Dsui_2828 0.50 -1.2
3,005,636 + Dsui_2828 0.56 -2.4
3,005,644 - -0.1
3,005,644 - Dsui_2828 0.57 -0.9
3,005,665 + Dsui_2828 0.59 +0.0
3,005,724 - +0.9
3,005,764 + Dsui_2828 0.69 -0.6
3,005,825 - Dsui_2828 0.75 +0.3
3,005,851 + Dsui_2828 0.78 -0.2
3,005,862 + Dsui_2828 0.79 -1.0
3,005,971 - Dsui_2828 0.89 +0.7
3,005,978 - -0.1
3,005,978 - -0.8
3,005,982 + -0.9
3,005,990 - -2.4
3,005,990 - +0.1
3,005,992 + -1.0
3,005,992 + +0.0
3,005,992 + +1.3

Or see this region's nucleotide sequence