Strain Fitness in Dechlorosoma suillum PS around Dsui_2545

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2544 and Dsui_2545 are separated by 14 nucleotidesDsui_2545 and Dsui_2546 are separated by 27 nucleotides Dsui_2544: Dsui_2544 - disulfide bond chaperone, at 2,695,537 to 2,696,394 _2544 Dsui_2545: Dsui_2545 - transcriptional regulator, Spx/MgsR family, at 2,696,409 to 2,696,756 _2545 Dsui_2546: Dsui_2546 - transcriptional accessory protein, at 2,696,784 to 2,699,099 _2546 Position (kb) 2696 2697Strain fitness (log2 ratio) -2 -1 0 1at 2695.411 kb on - strandat 2695.500 kb on + strandat 2695.508 kb on - strandat 2695.567 kb on - strandat 2695.706 kb on - strand, within Dsui_2544at 2695.718 kb on - strand, within Dsui_2544at 2695.750 kb on - strand, within Dsui_2544at 2695.757 kb on - strand, within Dsui_2544at 2695.865 kb on + strandat 2695.919 kb on - strand, within Dsui_2544at 2696.053 kb on + strand, within Dsui_2544at 2696.120 kb on + strand, within Dsui_2544at 2696.204 kb on - strand, within Dsui_2544at 2696.379 kb on + strandat 2696.503 kb on - strand, within Dsui_2545at 2696.532 kb on - strand, within Dsui_2545at 2696.589 kb on - strand, within Dsui_2545at 2696.693 kb on + strand, within Dsui_2545at 2696.741 kb on + strandat 2696.746 kb on + strandat 2696.746 kb on + strandat 2696.747 kb on + strandat 2696.804 kb on + strandat 2697.003 kb on - strandat 2697.088 kb on - strand, within Dsui_2546at 2697.242 kb on - strand, within Dsui_2546at 2697.289 kb on + strand, within Dsui_2546at 2697.370 kb on + strand, within Dsui_2546at 2697.448 kb on - strand, within Dsui_2546at 2697.593 kb on - strand, within Dsui_2546at 2697.623 kb on + strand, within Dsui_2546at 2697.626 kb on - strand, within Dsui_2546at 2697.626 kb on - strand, within Dsui_2546at 2697.626 kb on - strand, within Dsui_2546at 2697.641 kb on - strand, within Dsui_2546

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
2,695,411 - +1.5
2,695,500 + +0.1
2,695,508 - +0.5
2,695,567 - -0.1
2,695,706 - Dsui_2544 0.20 -0.1
2,695,718 - Dsui_2544 0.21 -0.3
2,695,750 - Dsui_2544 0.25 -0.4
2,695,757 - Dsui_2544 0.26 -0.1
2,695,865 + +0.4
2,695,919 - Dsui_2544 0.45 +0.0
2,696,053 + Dsui_2544 0.60 +0.3
2,696,120 + Dsui_2544 0.68 -0.3
2,696,204 - Dsui_2544 0.78 +0.6
2,696,379 + +0.0
2,696,503 - Dsui_2545 0.27 +0.2
2,696,532 - Dsui_2545 0.35 -0.3
2,696,589 - Dsui_2545 0.52 -0.0
2,696,693 + Dsui_2545 0.82 -1.4
2,696,741 + +0.1
2,696,746 + -0.9
2,696,746 + -0.3
2,696,747 + -1.0
2,696,804 + -0.1
2,697,003 - -1.0
2,697,088 - Dsui_2546 0.13 -0.4
2,697,242 - Dsui_2546 0.20 -0.4
2,697,289 + Dsui_2546 0.22 +0.3
2,697,370 + Dsui_2546 0.25 -1.8
2,697,448 - Dsui_2546 0.29 -0.9
2,697,593 - Dsui_2546 0.35 -0.6
2,697,623 + Dsui_2546 0.36 -0.3
2,697,626 - Dsui_2546 0.36 -0.8
2,697,626 - Dsui_2546 0.36 -0.7
2,697,626 - Dsui_2546 0.36 -1.0
2,697,641 - Dsui_2546 0.37 +1.0

Or see this region's nucleotide sequence