Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2433 and Dsui_2434 are separated by 143 nucleotides Dsui_2434 and Dsui_2435 overlap by 4 nucleotides Dsui_2435 and Dsui_2436 are separated by 88 nucleotides
Dsui_2433: Dsui_2433 - aspartate/tyrosine/aromatic aminotransferase, at 2,591,940 to 2,593,148
_2433
Dsui_2434: Dsui_2434 - excinuclease ABC, B subunit, at 2,593,292 to 2,595,364
_2434
Dsui_2435: Dsui_2435 - protein-tyrosine-phosphatase, at 2,595,361 to 2,595,888
_2435
Dsui_2436: Dsui_2436 - ribonuclease, Rne/Rng family, at 2,595,977 to 2,598,739
_2436
Position (kb)
2593
2594
2595
2596 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2592.307 kb on + strand, within Dsui_2433 at 2592.321 kb on - strand, within Dsui_2433 at 2592.375 kb on - strand, within Dsui_2433 at 2592.434 kb on - strand, within Dsui_2433 at 2592.442 kb on + strand, within Dsui_2433 at 2592.478 kb on - strand, within Dsui_2433 at 2592.548 kb on - strand, within Dsui_2433 at 2592.762 kb on + strand, within Dsui_2433 at 2592.781 kb on + strand, within Dsui_2433 at 2592.834 kb on - strand, within Dsui_2433 at 2592.915 kb on - strand, within Dsui_2433 at 2592.915 kb on - strand, within Dsui_2433 at 2592.915 kb on - strand, within Dsui_2433 at 2592.919 kb on + strand, within Dsui_2433 at 2592.961 kb on + strand, within Dsui_2433 at 2593.054 kb on - strand at 2593.054 kb on - strand at 2593.054 kb on - strand at 2593.060 kb on - strand at 2593.154 kb on + strand at 2593.189 kb on + strand at 2593.440 kb on + strand at 2593.474 kb on + strand at 2593.555 kb on + strand, within Dsui_2434 at 2593.555 kb on + strand, within Dsui_2434 at 2593.555 kb on + strand, within Dsui_2434 at 2593.600 kb on + strand, within Dsui_2434 at 2593.611 kb on + strand, within Dsui_2434 at 2593.624 kb on + strand, within Dsui_2434 at 2593.638 kb on - strand, within Dsui_2434 at 2593.650 kb on + strand, within Dsui_2434 at 2593.650 kb on + strand, within Dsui_2434 at 2593.658 kb on - strand, within Dsui_2434 at 2593.719 kb on + strand, within Dsui_2434 at 2593.765 kb on + strand, within Dsui_2434 at 2593.947 kb on + strand, within Dsui_2434 at 2593.995 kb on + strand, within Dsui_2434 at 2594.007 kb on - strand, within Dsui_2434 at 2594.009 kb on + strand, within Dsui_2434 at 2594.145 kb on + strand, within Dsui_2434 at 2594.303 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.389 kb on + strand, within Dsui_2434 at 2594.397 kb on - strand at 2594.397 kb on - strand at 2594.445 kb on + strand, within Dsui_2434 at 2594.535 kb on + strand, within Dsui_2434 at 2594.580 kb on + strand, within Dsui_2434 at 2594.612 kb on + strand, within Dsui_2434 at 2594.627 kb on + strand, within Dsui_2434 at 2594.667 kb on + strand, within Dsui_2434 at 2594.686 kb on + strand, within Dsui_2434 at 2594.711 kb on + strand, within Dsui_2434 at 2594.711 kb on + strand, within Dsui_2434 at 2594.753 kb on - strand, within Dsui_2434 at 2594.767 kb on + strand, within Dsui_2434 at 2594.798 kb on - strand, within Dsui_2434 at 2594.799 kb on - strand, within Dsui_2434 at 2594.861 kb on + strand, within Dsui_2434 at 2594.861 kb on + strand, within Dsui_2434 at 2594.871 kb on + strand, within Dsui_2434 at 2595.157 kb on + strand at 2595.161 kb on + strand at 2595.225 kb on - strand at 2595.260 kb on + strand at 2595.266 kb on + strand at 2595.312 kb on + strand at 2595.351 kb on + strand at 2595.361 kb on - strand at 2595.363 kb on + strand at 2595.388 kb on + strand at 2595.396 kb on - strand at 2595.518 kb on + strand, within Dsui_2435 at 2595.556 kb on - strand, within Dsui_2435 at 2595.556 kb on - strand, within Dsui_2435 at 2595.620 kb on + strand, within Dsui_2435 at 2595.680 kb on + strand, within Dsui_2435 at 2595.680 kb on + strand, within Dsui_2435 at 2595.748 kb on - strand, within Dsui_2435 at 2595.769 kb on + strand, within Dsui_2435 at 2595.779 kb on + strand, within Dsui_2435 at 2595.859 kb on + strand at 2595.865 kb on + strand at 2595.882 kb on + strand at 2595.936 kb on + strand at 2595.944 kb on + strand at 2595.968 kb on + strand at 2596.027 kb on - strand at 2596.074 kb on + strand at 2596.098 kb on - strand at 2596.162 kb on - strand at 2596.206 kb on - strand at 2596.234 kb on - strand at 2596.253 kb on - strand at 2596.271 kb on - strand, within Dsui_2436
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 2,592,307 + Dsui_2433 0.30 -0.6 2,592,321 - Dsui_2433 0.32 -1.0 2,592,375 - Dsui_2433 0.36 -1.1 2,592,434 - Dsui_2433 0.41 -2.4 2,592,442 + Dsui_2433 0.42 -1.9 2,592,478 - Dsui_2433 0.44 -1.8 2,592,548 - Dsui_2433 0.50 -1.2 2,592,762 + Dsui_2433 0.68 -0.2 2,592,781 + Dsui_2433 0.70 -1.5 2,592,834 - Dsui_2433 0.74 -3.3 2,592,915 - Dsui_2433 0.81 -4.2 2,592,915 - Dsui_2433 0.81 -2.5 2,592,915 - Dsui_2433 0.81 -2.9 2,592,919 + Dsui_2433 0.81 -0.4 2,592,961 + Dsui_2433 0.84 -1.1 2,593,054 - -0.5 2,593,054 - -1.5 2,593,054 - -2.1 2,593,060 - -1.1 2,593,154 + -0.6 2,593,189 + -0.1 2,593,440 + +0.6 2,593,474 + +0.7 2,593,555 + Dsui_2434 0.13 +0.5 2,593,555 + Dsui_2434 0.13 -0.6 2,593,555 + Dsui_2434 0.13 -0.4 2,593,600 + Dsui_2434 0.15 -0.8 2,593,611 + Dsui_2434 0.15 -0.1 2,593,624 + Dsui_2434 0.16 -1.1 2,593,638 - Dsui_2434 0.17 -0.9 2,593,650 + Dsui_2434 0.17 -0.1 2,593,650 + Dsui_2434 0.17 -1.6 2,593,658 - Dsui_2434 0.18 -0.5 2,593,719 + Dsui_2434 0.21 -0.2 2,593,765 + Dsui_2434 0.23 -0.7 2,593,947 + Dsui_2434 0.32 -0.2 2,593,995 + Dsui_2434 0.34 -0.4 2,594,007 - Dsui_2434 0.34 -0.5 2,594,009 + Dsui_2434 0.35 -0.2 2,594,145 + Dsui_2434 0.41 +0.0 2,594,303 + Dsui_2434 0.49 -0.2 2,594,389 + Dsui_2434 0.53 -0.8 2,594,389 + Dsui_2434 0.53 -0.0 2,594,389 + Dsui_2434 0.53 -0.9 2,594,389 + Dsui_2434 0.53 +1.5 2,594,389 + Dsui_2434 0.53 -1.2 2,594,389 + Dsui_2434 0.53 -0.8 2,594,397 - +1.9 2,594,397 - +2.5 2,594,445 + Dsui_2434 0.56 -0.3 2,594,535 + Dsui_2434 0.60 -0.9 2,594,580 + Dsui_2434 0.62 -0.5 2,594,612 + Dsui_2434 0.64 -0.2 2,594,627 + Dsui_2434 0.64 +0.6 2,594,667 + Dsui_2434 0.66 -0.8 2,594,686 + Dsui_2434 0.67 +0.3 2,594,711 + Dsui_2434 0.68 -0.4 2,594,711 + Dsui_2434 0.68 +0.5 2,594,753 - Dsui_2434 0.70 +0.1 2,594,767 + Dsui_2434 0.71 -0.2 2,594,798 - Dsui_2434 0.73 +0.9 2,594,799 - Dsui_2434 0.73 -1.3 2,594,861 + Dsui_2434 0.76 +0.1 2,594,861 + Dsui_2434 0.76 -0.8 2,594,871 + Dsui_2434 0.76 -0.0 2,595,157 + +0.3 2,595,161 + +0.5 2,595,225 - +0.6 2,595,260 + -0.6 2,595,266 + +0.8 2,595,312 + +0.2 2,595,351 + -0.7 2,595,361 - +0.6 2,595,363 + +0.4 2,595,388 + +0.3 2,595,396 - +1.8 2,595,518 + Dsui_2435 0.30 -0.1 2,595,556 - Dsui_2435 0.37 +0.1 2,595,556 - Dsui_2435 0.37 -1.6 2,595,620 + Dsui_2435 0.49 +0.4 2,595,680 + Dsui_2435 0.60 +0.5 2,595,680 + Dsui_2435 0.60 +0.9 2,595,748 - Dsui_2435 0.73 -1.6 2,595,769 + Dsui_2435 0.77 -0.0 2,595,779 + Dsui_2435 0.79 +0.1 2,595,859 + -0.6 2,595,865 + -0.3 2,595,882 + +0.5 2,595,936 + -2.4 2,595,944 + +0.1 2,595,968 + +0.9 2,596,027 - +0.3 2,596,074 + +1.0 2,596,098 - -0.3 2,596,162 - -1.1 2,596,206 - -0.2 2,596,234 - +0.3 2,596,253 - -0.7 2,596,271 - Dsui_2436 0.11 +0.9
Or see this region's nucleotide sequence