Strain Fitness in Dechlorosoma suillum PS around Dsui_2431

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2429 and Dsui_2430 are separated by 127 nucleotidesDsui_2430 and Dsui_2431 are separated by 54 nucleotidesDsui_2431 and Dsui_2432 are separated by 62 nucleotides Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719 _2429 Dsui_2430: Dsui_2430 - tRNA-Asn, at 2,589,847 to 2,589,922 _2430 Dsui_2431: Dsui_2431 - tRNA-Asn, at 2,589,977 to 2,590,052 _2431 Dsui_2432: Dsui_2432 - hypothetical protein, at 2,590,115 to 2,591,863 _2432 Position (kb) 2589 2590 2591Strain fitness (log2 ratio) -1 0 1 2 3at 2588.984 kb on + strandat 2588.987 kb on - strand, within Dsui_2429at 2589.034 kb on + strand, within Dsui_2429at 2589.034 kb on - strandat 2589.062 kb on + strandat 2589.184 kb on + strand, within Dsui_2429at 2589.184 kb on + strand, within Dsui_2429at 2589.184 kb on + strand, within Dsui_2429at 2589.192 kb on - strandat 2589.192 kb on - strandat 2589.244 kb on + strandat 2589.248 kb on + strand, within Dsui_2429at 2589.252 kb on - strandat 2589.262 kb on + strand, within Dsui_2429at 2589.270 kb on - strand, within Dsui_2429at 2589.272 kb on + strand, within Dsui_2429at 2589.290 kb on + strand, within Dsui_2429at 2589.348 kb on + strand, within Dsui_2429at 2589.371 kb on - strand, within Dsui_2429at 2589.433 kb on - strandat 2589.513 kb on - strandat 2589.625 kb on + strandat 2589.664 kb on + strandat 2589.891 kb on - strand, within Dsui_2430at 2589.938 kb on - strandat 2590.205 kb on + strandat 2590.205 kb on + strandat 2590.205 kb on + strandat 2590.440 kb on - strandat 2590.672 kb on - strandat 2590.706 kb on + strand, within Dsui_2432at 2590.706 kb on + strand, within Dsui_2432at 2590.712 kb on + strand, within Dsui_2432at 2590.717 kb on + strand, within Dsui_2432at 2590.735 kb on + strand, within Dsui_2432at 2590.871 kb on + strand, within Dsui_2432at 2590.879 kb on - strandat 2591.002 kb on + strand, within Dsui_2432at 2591.002 kb on + strand, within Dsui_2432

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,588,984 + +2.3
2,588,987 - Dsui_2429 0.36 +0.1
2,589,034 + Dsui_2429 0.40 +0.0
2,589,034 - +1.9
2,589,062 + -0.1
2,589,184 + Dsui_2429 0.53 -0.1
2,589,184 + Dsui_2429 0.53 -1.6
2,589,184 + Dsui_2429 0.53 +0.1
2,589,192 - +0.3
2,589,192 - -0.1
2,589,244 + +0.9
2,589,248 + Dsui_2429 0.59 +0.1
2,589,252 - +0.9
2,589,262 + Dsui_2429 0.60 +1.3
2,589,270 - Dsui_2429 0.61 -0.7
2,589,272 + Dsui_2429 0.61 -0.2
2,589,290 + Dsui_2429 0.62 +2.2
2,589,348 + Dsui_2429 0.67 +0.2
2,589,371 - Dsui_2429 0.69 -0.4
2,589,433 - -0.4
2,589,513 - +0.3
2,589,625 + +0.6
2,589,664 + +2.9
2,589,891 - Dsui_2430 0.58 -1.1
2,589,938 - -0.2
2,590,205 + -0.9
2,590,205 + +0.3
2,590,205 + -1.1
2,590,440 - +0.9
2,590,672 - +1.9
2,590,706 + Dsui_2432 0.34 -0.1
2,590,706 + Dsui_2432 0.34 +0.3
2,590,712 + Dsui_2432 0.34 -0.4
2,590,717 + Dsui_2432 0.34 -0.1
2,590,735 + Dsui_2432 0.35 +1.8
2,590,871 + Dsui_2432 0.43 -1.2
2,590,879 - +1.9
2,591,002 + Dsui_2432 0.51 +1.0
2,591,002 + Dsui_2432 0.51 +0.9

Or see this region's nucleotide sequence