Strain Fitness in Dechlorosoma suillum PS around Dsui_2412

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2411 and Dsui_2412 are separated by 125 nucleotidesDsui_2412 and Dsui_2413 are separated by 33 nucleotides Dsui_2411: Dsui_2411 - alanine racemase, at 2,562,349 to 2,563,440 _2411 Dsui_2412: Dsui_2412 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,563,566 to 2,566,304 _2412 Dsui_2413: Dsui_2413 - DNA repair protein RadA, at 2,566,338 to 2,567,711 _2413 Position (kb) 2563 2564 2565 2566 2567Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2563.445 kb on + strandat 2563.622 kb on - strandat 2563.694 kb on + strandat 2563.923 kb on + strand, within Dsui_2412at 2564.225 kb on + strand, within Dsui_2412at 2564.281 kb on - strand, within Dsui_2412at 2564.412 kb on + strand, within Dsui_2412at 2564.415 kb on - strandat 2564.525 kb on + strand, within Dsui_2412at 2564.674 kb on + strand, within Dsui_2412at 2564.674 kb on + strand, within Dsui_2412at 2564.674 kb on + strand, within Dsui_2412at 2564.741 kb on + strand, within Dsui_2412at 2564.749 kb on - strandat 2564.768 kb on + strand, within Dsui_2412at 2564.776 kb on - strandat 2564.827 kb on + strand, within Dsui_2412at 2564.827 kb on + strand, within Dsui_2412at 2564.835 kb on - strandat 2565.018 kb on + strand, within Dsui_2412at 2565.025 kb on + strand, within Dsui_2412at 2565.040 kb on + strand, within Dsui_2412at 2565.173 kb on + strand, within Dsui_2412at 2565.206 kb on + strand, within Dsui_2412at 2565.303 kb on + strand, within Dsui_2412at 2565.352 kb on + strand, within Dsui_2412at 2565.408 kb on + strand, within Dsui_2412at 2565.424 kb on + strandat 2565.523 kb on + strand, within Dsui_2412at 2565.597 kb on + strandat 2565.639 kb on + strand, within Dsui_2412at 2565.670 kb on + strand, within Dsui_2412at 2565.685 kb on + strand, within Dsui_2412at 2565.686 kb on - strandat 2565.793 kb on + strand, within Dsui_2412at 2565.815 kb on + strand, within Dsui_2412at 2565.913 kb on + strand, within Dsui_2412at 2565.913 kb on + strand, within Dsui_2412at 2565.990 kb on - strandat 2566.170 kb on + strandat 2566.232 kb on + strandat 2566.326 kb on - strandat 2566.355 kb on + strandat 2566.436 kb on + strandat 2566.530 kb on + strand, within Dsui_2413at 2566.558 kb on + strand, within Dsui_2413at 2566.576 kb on - strandat 2566.591 kb on - strandat 2566.669 kb on + strand, within Dsui_2413at 2566.908 kb on + strand, within Dsui_2413at 2567.153 kb on + strand, within Dsui_2413at 2567.200 kb on + strand, within Dsui_2413

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,563,445 + +0.3
2,563,622 - +1.9
2,563,694 + +0.0
2,563,923 + Dsui_2412 0.13 -0.7
2,564,225 + Dsui_2412 0.24 +1.3
2,564,281 - Dsui_2412 0.26 +0.3
2,564,412 + Dsui_2412 0.31 -0.0
2,564,415 - +2.9
2,564,525 + Dsui_2412 0.35 -1.3
2,564,674 + Dsui_2412 0.40 +0.5
2,564,674 + Dsui_2412 0.40 -0.7
2,564,674 + Dsui_2412 0.40 +0.5
2,564,741 + Dsui_2412 0.43 +0.0
2,564,749 - +0.3
2,564,768 + Dsui_2412 0.44 +1.0
2,564,776 - +1.9
2,564,827 + Dsui_2412 0.46 -0.1
2,564,827 + Dsui_2412 0.46 +0.2
2,564,835 - +0.9
2,565,018 + Dsui_2412 0.53 +0.3
2,565,025 + Dsui_2412 0.53 +0.0
2,565,040 + Dsui_2412 0.54 -0.6
2,565,173 + Dsui_2412 0.59 -1.0
2,565,206 + Dsui_2412 0.60 -1.8
2,565,303 + Dsui_2412 0.63 +0.2
2,565,352 + Dsui_2412 0.65 -1.6
2,565,408 + Dsui_2412 0.67 -0.4
2,565,424 + +0.9
2,565,523 + Dsui_2412 0.71 +0.3
2,565,597 + -0.1
2,565,639 + Dsui_2412 0.76 -0.1
2,565,670 + Dsui_2412 0.77 -0.0
2,565,685 + Dsui_2412 0.77 -0.3
2,565,686 - +0.9
2,565,793 + Dsui_2412 0.81 +0.2
2,565,815 + Dsui_2412 0.82 -1.2
2,565,913 + Dsui_2412 0.86 -0.9
2,565,913 + Dsui_2412 0.86 -2.3
2,565,990 - +1.9
2,566,170 + +0.9
2,566,232 + -0.1
2,566,326 - +1.9
2,566,355 + +0.0
2,566,436 + -0.7
2,566,530 + Dsui_2413 0.14 -0.5
2,566,558 + Dsui_2413 0.16 -0.6
2,566,576 - -0.1
2,566,591 - +1.9
2,566,669 + Dsui_2413 0.24 +0.1
2,566,908 + Dsui_2413 0.41 +0.3
2,567,153 + Dsui_2413 0.59 -0.1
2,567,200 + Dsui_2413 0.63 +0.4

Or see this region's nucleotide sequence