Strain Fitness in Dechlorosoma suillum PS around Dsui_2188

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2187 and Dsui_2188 are separated by 320 nucleotidesDsui_2188 and Dsui_2189 are separated by 145 nucleotides Dsui_2187: Dsui_2187 - acyl-CoA synthetase/AMP-acid ligase, at 2,321,416 to 2,323,113 _2187 Dsui_2188: Dsui_2188 - Protein of unknown function (DUF3460), at 2,323,434 to 2,323,625 _2188 Dsui_2189: Dsui_2189 - acyl-CoA synthetase (NDP forming), at 2,323,771 to 2,326,461 _2189 Position (kb) 2323 2324Strain fitness (log2 ratio) -1 0 1 2at 2322.437 kb on + strand, within Dsui_2187at 2322.463 kb on + strandat 2322.471 kb on - strandat 2322.782 kb on - strandat 2322.804 kb on + strand, within Dsui_2187at 2322.850 kb on - strand, within Dsui_2187at 2322.906 kb on - strandat 2323.017 kb on + strandat 2323.034 kb on + strandat 2323.048 kb on + strandat 2323.096 kb on + strandat 2323.176 kb on - strandat 2323.329 kb on + strandat 2323.431 kb on + strandat 2323.450 kb on - strandat 2323.457 kb on + strand, within Dsui_2188at 2323.547 kb on + strand, within Dsui_2188at 2323.587 kb on + strand, within Dsui_2188at 2323.595 kb on + strand, within Dsui_2188at 2323.619 kb on - strandat 2323.640 kb on + strandat 2323.669 kb on + strandat 2323.669 kb on - strandat 2323.749 kb on + strandat 2324.195 kb on - strand, within Dsui_2189at 2324.280 kb on - strand, within Dsui_2189at 2324.420 kb on + strandat 2324.474 kb on - strand, within Dsui_2189

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,322,437 + Dsui_2187 0.60 +0.4
2,322,463 + -0.9
2,322,471 - +1.3
2,322,782 - +1.9
2,322,804 + Dsui_2187 0.82 +1.9
2,322,850 - Dsui_2187 0.84 -0.8
2,322,906 - +1.3
2,323,017 + +0.0
2,323,034 + -0.1
2,323,048 + +0.7
2,323,096 + +0.9
2,323,176 - +0.3
2,323,329 + +0.7
2,323,431 + +0.2
2,323,450 - +1.3
2,323,457 + Dsui_2188 0.12 +0.2
2,323,547 + Dsui_2188 0.59 -0.0
2,323,587 + Dsui_2188 0.80 +0.6
2,323,595 + Dsui_2188 0.84 +0.4
2,323,619 - -0.4
2,323,640 + +0.3
2,323,669 + +0.8
2,323,669 - +0.8
2,323,749 + -0.9
2,324,195 - Dsui_2189 0.16 -1.6
2,324,280 - Dsui_2189 0.19 +0.3
2,324,420 + +1.9
2,324,474 - Dsui_2189 0.26 -0.4

Or see this region's nucleotide sequence