Strain Fitness in Dechlorosoma suillum PS around Dsui_2175

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2174 and Dsui_2175 are separated by 113 nucleotidesDsui_2175 and Dsui_2176 are separated by 147 nucleotides Dsui_2174: Dsui_2174 - putative signal transduction protein, at 2,309,746 to 2,310,600 _2174 Dsui_2175: Dsui_2175 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,310,714 to 2,312,354 _2175 Dsui_2176: Dsui_2176 - putative esterase of the alpha-beta hydrolase superfamily, at 2,312,502 to 2,313,542 _2176 Position (kb) 2310 2311 2312 2313Strain fitness (log2 ratio) -2 -1 0 1 2at 2309.770 kb on - strandat 2309.781 kb on - strandat 2309.866 kb on + strandat 2309.866 kb on + strandat 2309.874 kb on - strand, within Dsui_2174at 2309.874 kb on - strand, within Dsui_2174at 2309.879 kb on - strand, within Dsui_2174at 2309.896 kb on + strand, within Dsui_2174at 2309.904 kb on - strand, within Dsui_2174at 2309.908 kb on + strand, within Dsui_2174at 2309.945 kb on - strand, within Dsui_2174at 2309.946 kb on + strandat 2309.989 kb on + strandat 2310.257 kb on + strandat 2310.265 kb on - strand, within Dsui_2174at 2310.265 kb on - strand, within Dsui_2174at 2310.305 kb on - strand, within Dsui_2174at 2310.415 kb on - strand, within Dsui_2174at 2310.451 kb on - strand, within Dsui_2174at 2310.501 kb on - strand, within Dsui_2174at 2310.617 kb on - strandat 2312.352 kb on - strandat 2312.368 kb on - strandat 2312.457 kb on + strandat 2312.466 kb on - strandat 2312.585 kb on + strandat 2312.613 kb on - strandat 2312.701 kb on - strandat 2312.701 kb on - strand, within Dsui_2176at 2312.748 kb on + strand, within Dsui_2176at 2312.774 kb on + strand, within Dsui_2176at 2312.779 kb on + strand, within Dsui_2176at 2312.800 kb on + strand, within Dsui_2176at 2312.936 kb on + strandat 2313.083 kb on + strand, within Dsui_2176at 2313.213 kb on - strand, within Dsui_2176at 2313.217 kb on + strand, within Dsui_2176at 2313.229 kb on + strand, within Dsui_2176at 2313.351 kb on + strand, within Dsui_2176

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,309,770 - +0.4
2,309,781 - +1.2
2,309,866 + +1.9
2,309,866 + +0.9
2,309,874 - Dsui_2174 0.15 +0.2
2,309,874 - Dsui_2174 0.15 -0.1
2,309,879 - Dsui_2174 0.16 +0.1
2,309,896 + Dsui_2174 0.18 +0.2
2,309,904 - Dsui_2174 0.18 -0.3
2,309,908 + Dsui_2174 0.19 +2.0
2,309,945 - Dsui_2174 0.23 +0.4
2,309,946 + +0.3
2,309,989 + +0.3
2,310,257 + +0.9
2,310,265 - Dsui_2174 0.61 +0.3
2,310,265 - Dsui_2174 0.61 -0.6
2,310,305 - Dsui_2174 0.65 +0.2
2,310,415 - Dsui_2174 0.78 +0.7
2,310,451 - Dsui_2174 0.82 -0.5
2,310,501 - Dsui_2174 0.88 -0.3
2,310,617 - -1.9
2,312,352 - +1.6
2,312,368 - +1.0
2,312,457 + +0.2
2,312,466 - +0.1
2,312,585 + +0.2
2,312,613 - +0.9
2,312,701 - -0.9
2,312,701 - Dsui_2176 0.19 -1.1
2,312,748 + Dsui_2176 0.24 +0.9
2,312,774 + Dsui_2176 0.26 -1.4
2,312,779 + Dsui_2176 0.27 +1.4
2,312,800 + Dsui_2176 0.29 +1.2
2,312,936 + +0.9
2,313,083 + Dsui_2176 0.56 -0.9
2,313,213 - Dsui_2176 0.68 -2.2
2,313,217 + Dsui_2176 0.69 -0.3
2,313,229 + Dsui_2176 0.70 -1.4
2,313,351 + Dsui_2176 0.82 -0.6

Or see this region's nucleotide sequence