Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1872 and Dsui_1873 are separated by 170 nucleotides Dsui_1873 and Dsui_1874 overlap by 1 nucleotides Dsui_1874 and Dsui_1875 are separated by 66 nucleotides Dsui_1875 and Dsui_1876 are separated by 146 nucleotides
Dsui_1872: Dsui_1872 - RND family efflux transporter, MFP subunit, at 1,971,002 to 1,972,261
_1872
Dsui_1873: Dsui_1873 - transcriptional regulator, at 1,972,432 to 1,973,046
_1873
Dsui_1874: Dsui_1874 - hypothetical protein, at 1,973,046 to 1,973,378
_1874
Dsui_1875: Dsui_1875 - hypothetical protein, at 1,973,445 to 1,973,618
_1875
Dsui_1876: Dsui_1876 - transcriptional regulator, at 1,973,765 to 1,974,349
_1876
Position (kb)
1973
1974 Strain fitness (log2 ratio)
-1
0
1
2 at 1972.064 kb on - strand, within Dsui_1872 at 1972.075 kb on + strand, within Dsui_1872 at 1972.075 kb on + strand at 1972.089 kb on + strand at 1972.127 kb on - strand, within Dsui_1872 at 1972.130 kb on + strand, within Dsui_1872 at 1972.130 kb on + strand at 1972.153 kb on - strand at 1972.234 kb on - strand at 1972.239 kb on + strand at 1972.390 kb on - strand at 1972.548 kb on + strand, within Dsui_1873 at 1972.556 kb on + strand, within Dsui_1873 at 1972.595 kb on + strand, within Dsui_1873 at 1972.597 kb on + strand, within Dsui_1873 at 1972.739 kb on + strand, within Dsui_1873 at 1972.859 kb on + strand, within Dsui_1873 at 1972.925 kb on + strand, within Dsui_1873 at 1973.055 kb on + strand at 1973.167 kb on + strand, within Dsui_1874 at 1973.167 kb on + strand, within Dsui_1874 at 1973.173 kb on + strand, within Dsui_1874 at 1973.181 kb on - strand, within Dsui_1874 at 1973.233 kb on - strand, within Dsui_1874 at 1973.270 kb on - strand, within Dsui_1874 at 1973.334 kb on - strand, within Dsui_1874 at 1973.356 kb on + strand at 1973.438 kb on + strand at 1973.526 kb on - strand, within Dsui_1875 at 1973.545 kb on - strand, within Dsui_1875 at 1973.581 kb on - strand, within Dsui_1875 at 1973.601 kb on + strand at 1973.601 kb on + strand at 1973.645 kb on - strand at 1973.828 kb on + strand, within Dsui_1876 at 1973.892 kb on + strand, within Dsui_1876 at 1974.068 kb on + strand, within Dsui_1876 at 1974.142 kb on + strand, within Dsui_1876 at 1974.147 kb on + strand, within Dsui_1876 at 1974.224 kb on + strand, within Dsui_1876 at 1974.313 kb on + strand at 1974.320 kb on + strand at 1974.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,972,064 - Dsui_1872 0.84 -0.0 1,972,075 + Dsui_1872 0.85 -0.4 1,972,075 + -0.3 1,972,089 + +2.0 1,972,127 - Dsui_1872 0.89 +0.3 1,972,130 + Dsui_1872 0.90 -1.3 1,972,130 + +1.0 1,972,153 - +1.7 1,972,234 - +0.9 1,972,239 + +0.3 1,972,390 - +2.0 1,972,548 + Dsui_1873 0.19 +0.0 1,972,556 + Dsui_1873 0.20 -0.2 1,972,595 + Dsui_1873 0.27 -0.2 1,972,597 + Dsui_1873 0.27 +0.0 1,972,739 + Dsui_1873 0.50 +0.3 1,972,859 + Dsui_1873 0.69 +0.1 1,972,925 + Dsui_1873 0.80 +2.3 1,973,055 + -0.0 1,973,167 + Dsui_1874 0.36 -1.2 1,973,167 + Dsui_1874 0.36 -0.5 1,973,173 + Dsui_1874 0.38 -1.6 1,973,181 - Dsui_1874 0.41 +0.1 1,973,233 - Dsui_1874 0.56 +0.4 1,973,270 - Dsui_1874 0.67 -0.5 1,973,334 - Dsui_1874 0.86 -0.4 1,973,356 + +0.8 1,973,438 + +0.4 1,973,526 - Dsui_1875 0.47 +1.4 1,973,545 - Dsui_1875 0.57 -0.1 1,973,581 - Dsui_1875 0.78 +0.9 1,973,601 + +1.1 1,973,601 + +0.6 1,973,645 - +0.1 1,973,828 + Dsui_1876 0.11 +1.2 1,973,892 + Dsui_1876 0.22 -0.6 1,974,068 + Dsui_1876 0.52 -0.3 1,974,142 + Dsui_1876 0.64 -0.6 1,974,147 + Dsui_1876 0.65 -0.1 1,974,224 + Dsui_1876 0.78 -0.3 1,974,313 + -0.4 1,974,320 + -0.7 1,974,367 + +0.1
Or see this region's nucleotide sequence