Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1721 and Dsui_1722 are separated by 178 nucleotides Dsui_1722 and Dsui_1723 overlap by 8 nucleotides
Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116
_1721
Dsui_1722: Dsui_1722 - flagellar biosynthetic protein FlhB, at 1,812,295 to 1,813,434
_1722
Dsui_1723: Dsui_1723 - flagellar biosynthesis protein FlhA, at 1,813,427 to 1,815,508
_1723
Position (kb)
1812
1813
1814 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1811.298 kb on - strand at 1811.429 kb on + strand, within Dsui_1721 at 1811.437 kb on - strand, within Dsui_1721 at 1811.494 kb on + strand, within Dsui_1721 at 1811.554 kb on + strand, within Dsui_1721 at 1811.568 kb on - strand, within Dsui_1721 at 1811.574 kb on - strand, within Dsui_1721 at 1811.662 kb on + strand, within Dsui_1721 at 1811.721 kb on - strand, within Dsui_1721 at 1811.834 kb on + strand, within Dsui_1721 at 1811.849 kb on - strand, within Dsui_1721 at 1811.905 kb on + strand, within Dsui_1721 at 1811.913 kb on - strand, within Dsui_1721 at 1811.913 kb on - strand, within Dsui_1721 at 1812.020 kb on - strand at 1812.055 kb on - strand at 1812.129 kb on + strand at 1812.291 kb on + strand at 1812.349 kb on + strand at 1812.438 kb on - strand, within Dsui_1722 at 1812.461 kb on + strand, within Dsui_1722 at 1812.500 kb on + strand, within Dsui_1722 at 1812.596 kb on + strand, within Dsui_1722 at 1812.625 kb on - strand, within Dsui_1722 at 1812.664 kb on + strand, within Dsui_1722 at 1812.664 kb on + strand, within Dsui_1722 at 1812.674 kb on + strand, within Dsui_1722 at 1812.723 kb on + strand, within Dsui_1722 at 1812.732 kb on + strand, within Dsui_1722 at 1812.740 kb on - strand, within Dsui_1722 at 1812.767 kb on - strand, within Dsui_1722 at 1812.779 kb on + strand, within Dsui_1722 at 1812.796 kb on - strand, within Dsui_1722 at 1812.843 kb on + strand, within Dsui_1722 at 1812.851 kb on - strand, within Dsui_1722 at 1812.950 kb on + strand, within Dsui_1722 at 1813.019 kb on - strand, within Dsui_1722 at 1813.082 kb on - strand, within Dsui_1722 at 1813.128 kb on - strand, within Dsui_1722 at 1813.240 kb on + strand, within Dsui_1722 at 1813.263 kb on - strand, within Dsui_1722 at 1813.265 kb on + strand, within Dsui_1722 at 1813.294 kb on + strand, within Dsui_1722 at 1813.297 kb on - strand, within Dsui_1722 at 1813.302 kb on - strand, within Dsui_1722 at 1813.307 kb on - strand, within Dsui_1722 at 1813.326 kb on - strand at 1813.326 kb on - strand at 1813.380 kb on + strand at 1813.404 kb on + strand at 1813.412 kb on - strand at 1813.496 kb on + strand at 1813.630 kb on - strand at 1813.670 kb on - strand, within Dsui_1723 at 1813.757 kb on + strand, within Dsui_1723 at 1813.795 kb on + strand, within Dsui_1723 at 1813.930 kb on + strand, within Dsui_1723 at 1813.930 kb on + strand, within Dsui_1723 at 1813.930 kb on + strand, within Dsui_1723 at 1814.053 kb on - strand, within Dsui_1723 at 1814.074 kb on - strand, within Dsui_1723 at 1814.115 kb on + strand, within Dsui_1723 at 1814.216 kb on + strand, within Dsui_1723 at 1814.306 kb on - strand at 1814.344 kb on + strand, within Dsui_1723 at 1814.349 kb on + strand, within Dsui_1723 at 1814.418 kb on - strand, within Dsui_1723 at 1814.419 kb on + strand, within Dsui_1723 at 1814.419 kb on + strand, within Dsui_1723 at 1814.419 kb on + strand, within Dsui_1723 at 1814.419 kb on + strand, within Dsui_1723 at 1814.419 kb on + strand, within Dsui_1723 at 1814.427 kb on - strand, within Dsui_1723
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,811,298 - +2.8 1,811,429 + Dsui_1721 0.64 -0.5 1,811,437 - Dsui_1721 0.64 +0.7 1,811,494 + Dsui_1721 0.67 -1.0 1,811,554 + Dsui_1721 0.70 -0.9 1,811,568 - Dsui_1721 0.71 -0.3 1,811,574 - Dsui_1721 0.71 -2.1 1,811,662 + Dsui_1721 0.76 -0.4 1,811,721 - Dsui_1721 0.79 +0.5 1,811,834 + Dsui_1721 0.85 +0.2 1,811,849 - Dsui_1721 0.86 -1.1 1,811,905 + Dsui_1721 0.89 -1.1 1,811,913 - Dsui_1721 0.89 -0.2 1,811,913 - Dsui_1721 0.89 -0.9 1,812,020 - +0.6 1,812,055 - +0.5 1,812,129 + +0.2 1,812,291 + +1.6 1,812,349 + -1.5 1,812,438 - Dsui_1722 0.13 +1.3 1,812,461 + Dsui_1722 0.15 -1.1 1,812,500 + Dsui_1722 0.18 -0.1 1,812,596 + Dsui_1722 0.26 -0.2 1,812,625 - Dsui_1722 0.29 -0.7 1,812,664 + Dsui_1722 0.32 -0.5 1,812,664 + Dsui_1722 0.32 -0.1 1,812,674 + Dsui_1722 0.33 -0.5 1,812,723 + Dsui_1722 0.38 +0.0 1,812,732 + Dsui_1722 0.38 -1.1 1,812,740 - Dsui_1722 0.39 -0.4 1,812,767 - Dsui_1722 0.41 -0.1 1,812,779 + Dsui_1722 0.42 +0.2 1,812,796 - Dsui_1722 0.44 -1.4 1,812,843 + Dsui_1722 0.48 -1.9 1,812,851 - Dsui_1722 0.49 +1.0 1,812,950 + Dsui_1722 0.57 -0.9 1,813,019 - Dsui_1722 0.64 +0.7 1,813,082 - Dsui_1722 0.69 -0.6 1,813,128 - Dsui_1722 0.73 -1.2 1,813,240 + Dsui_1722 0.83 -2.0 1,813,263 - Dsui_1722 0.85 -1.3 1,813,265 + Dsui_1722 0.85 -3.2 1,813,294 + Dsui_1722 0.88 -1.0 1,813,297 - Dsui_1722 0.88 -0.3 1,813,302 - Dsui_1722 0.88 -1.9 1,813,307 - Dsui_1722 0.89 -0.0 1,813,326 - -1.4 1,813,326 - -1.3 1,813,380 + -1.0 1,813,404 + +0.1 1,813,412 - -0.9 1,813,496 + +0.6 1,813,630 - -2.2 1,813,670 - Dsui_1723 0.12 -0.9 1,813,757 + Dsui_1723 0.16 -0.4 1,813,795 + Dsui_1723 0.18 -1.4 1,813,930 + Dsui_1723 0.24 -1.3 1,813,930 + Dsui_1723 0.24 +0.4 1,813,930 + Dsui_1723 0.24 -1.0 1,814,053 - Dsui_1723 0.30 -1.3 1,814,074 - Dsui_1723 0.31 -1.7 1,814,115 + Dsui_1723 0.33 -0.4 1,814,216 + Dsui_1723 0.38 -2.3 1,814,306 - +1.0 1,814,344 + Dsui_1723 0.44 -0.6 1,814,349 + Dsui_1723 0.44 -1.0 1,814,418 - Dsui_1723 0.48 -2.4 1,814,419 + Dsui_1723 0.48 -0.6 1,814,419 + Dsui_1723 0.48 -1.0 1,814,419 + Dsui_1723 0.48 -1.4 1,814,419 + Dsui_1723 0.48 -0.2 1,814,419 + Dsui_1723 0.48 -0.7 1,814,427 - Dsui_1723 0.48 -1.4
Or see this region's nucleotide sequence