Strain Fitness in Dechlorosoma suillum PS around Dsui_1649

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1647 and Dsui_1648 are separated by 129 nucleotidesDsui_1648 and Dsui_1649 are separated by 19 nucleotidesDsui_1649 and Dsui_1650 are separated by 183 nucleotides Dsui_1647: Dsui_1647 - oxygen-independent coproporphyrinogen III oxidase, at 1,728,357 to 1,729,754 _1647 Dsui_1648: Dsui_1648 - hypothetical protein, at 1,729,884 to 1,730,570 _1648 Dsui_1649: Dsui_1649 - universal stress protein UspA-like protein, at 1,730,590 to 1,731,018 _1649 Dsui_1650: Dsui_1650 - copper/silver-translocating P-type ATPase, at 1,731,202 to 1,733,637 _1650 Position (kb) 1730 1731 1732Strain fitness (log2 ratio) -1 0 1 2 3at 1729.658 kb on + strandat 1729.797 kb on - strandat 1729.824 kb on - strandat 1729.849 kb on - strandat 1729.876 kb on + strandat 1730.800 kb on - strand, within Dsui_1649at 1730.857 kb on + strand, within Dsui_1649at 1730.906 kb on + strand, within Dsui_1649at 1731.083 kb on + strandat 1731.127 kb on + strandat 1731.141 kb on + strandat 1731.142 kb on - strandat 1731.343 kb on - strandat 1731.369 kb on + strandat 1731.379 kb on + strandat 1731.387 kb on - strandat 1731.387 kb on - strandat 1731.423 kb on - strandat 1731.458 kb on + strand, within Dsui_1650at 1731.517 kb on + strand, within Dsui_1650at 1731.613 kb on - strandat 1731.741 kb on + strand, within Dsui_1650at 1731.939 kb on + strand, within Dsui_1650at 1731.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,729,658 + -1.2
1,729,797 - -1.1
1,729,824 - -0.1
1,729,849 - +0.9
1,729,876 + +0.8
1,730,800 - Dsui_1649 0.49 +0.6
1,730,857 + Dsui_1649 0.62 +0.1
1,730,906 + Dsui_1649 0.74 +0.5
1,731,083 + +0.0
1,731,127 + -0.5
1,731,141 + -0.1
1,731,142 - +1.9
1,731,343 - +0.6
1,731,369 + +0.2
1,731,379 + -0.1
1,731,387 - +0.4
1,731,387 - +2.9
1,731,423 - +1.9
1,731,458 + Dsui_1650 0.11 -0.8
1,731,517 + Dsui_1650 0.13 +0.8
1,731,613 - -0.1
1,731,741 + Dsui_1650 0.22 -0.8
1,731,939 + Dsui_1650 0.30 +0.7
1,731,978 - +1.6

Or see this region's nucleotide sequence