Strain Fitness in Dechlorosoma suillum PS around Dsui_1592

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1591 and Dsui_1592 overlap by 4 nucleotidesDsui_1592 and Dsui_1593 are separated by 333 nucleotides Dsui_1591: Dsui_1591 - Xaa-Pro aminopeptidase, at 1,670,980 to 1,672,281 _1591 Dsui_1592: Dsui_1592 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,672,278 to 1,673,432 _1592 Dsui_1593: Dsui_1593 - putative TIM-barrel protein, nifR3 family, at 1,673,766 to 1,674,797 _1593 Position (kb) 1672 1673 1674Strain fitness (log2 ratio) -2 -1 0 1 2at 1671.555 kb on + strand, within Dsui_1591at 1671.555 kb on + strand, within Dsui_1591at 1671.673 kb on + strand, within Dsui_1591at 1671.685 kb on + strand, within Dsui_1591at 1671.855 kb on + strand, within Dsui_1591at 1671.944 kb on + strand, within Dsui_1591at 1671.991 kb on + strandat 1673.571 kb on + strandat 1673.605 kb on + strandat 1673.896 kb on + strand, within Dsui_1593at 1674.012 kb on + strand, within Dsui_1593at 1674.293 kb on + strand, within Dsui_1593at 1674.296 kb on + strand, within Dsui_1593at 1674.314 kb on + strand, within Dsui_1593at 1674.330 kb on - strandat 1674.394 kb on - strandat 1674.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,671,555 + Dsui_1591 0.44 +0.3
1,671,555 + Dsui_1591 0.44 +1.3
1,671,673 + Dsui_1591 0.53 -0.9
1,671,685 + Dsui_1591 0.54 -0.7
1,671,855 + Dsui_1591 0.67 -0.4
1,671,944 + Dsui_1591 0.74 +1.9
1,671,991 + +0.9
1,673,571 + -0.1
1,673,605 + +0.7
1,673,896 + Dsui_1593 0.13 -0.8
1,674,012 + Dsui_1593 0.24 -0.5
1,674,293 + Dsui_1593 0.51 -1.2
1,674,296 + Dsui_1593 0.51 -0.0
1,674,314 + Dsui_1593 0.53 -2.1
1,674,330 - -0.7
1,674,394 - +0.1
1,674,411 - +0.3

Or see this region's nucleotide sequence